Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02064 ATGAGCGATGAAGAGCTCCTGTGGCGAGCTTCTAAGGTGCCTCGTTTGAAAGAAAGCCCTAATAATCAGACGGCGAAAGTGGCCTTCATGTTTTTGACGAGAGGAAGATTGCCATTATCTCCTCTCTGGGAAATGTTCTTTGAGGGTTATAAAGGTTTCTACTCAATTTACGTGCATACCTCGCCGGAGTACATGAAGGATCCACAACCGACTTCTGTTTTCTACAACCGTCGAATACCCAGCAGGGTAGTAGAATGGGGAAGATCATCAGTACTCGACGCAGAGAGGCGCCTATTAGCAAACGCCCTCCTTGATTTCTCCAACGAACGGTTTGTCTTACTGTCCGAAACATGCATTCCTCTCTTTAACTTCTCTATGCTCTACTCCTACCTCATCAACTCCAACCAAAGCTTTGTTAGTTCCTTCGATGATCCTCGACGAGTCGGACGAGGTCGATACAACAAACGAATGTGGCCCACTATATCACTCAAGGACTGGCGAAAAGGCAACCAATGGTTGGAAGTCCATAGGAACATCGCCATTGAGATTGTTTCTGACACTTTGTACTACCCTATCTTTAGGGATCTTTGTAACCCGCCTTGTTACATTGATGAGCACTACGTGGCAACATTGGTGACAAAAATCTCGCCGGAGACAAACTCGAACCGCTCCATCACTTGGGTGGATTGGCCTCGCAGAGGCGGTCCTCACCCGACTACGTTTGTGAGGAAAGACGTATCTGAAGGGTTCTTGAGTTGGGTGAGGAACGGGTTCAATTGTAGTTATAATGGTGTTGTTAGTAATATGTGCTTCCTTTTTGCTAGAAAATTTCACCCCAACACACTAGAACCTCTGTTGAAATTAGCTCCTAGGGTTCTTGGGTTTGGTACTTCTCAAGTGCATTGA 906 46.14 MSDEELLWRASKVPRLKESPNNQTAKVAFMFLTRGRLPLSPLWEMFFEGYKGFYSIYVHTSPEYMKDPQPTSVFYNRRIPSRVVEWGRSSVLDAERRLLANALLDFSNERFVLLSETCIPLFNFSMLYSYLINSNQSFVSSFDDPRRVGRGRYNKRMWPTISLKDWRKGNQWLEVHRNIAIEIVSDTLYYPIFRDLCNPPCYIDEHYVATLVTKISPETNSNRSITWVDWPRRGGPHPTTFVRKDVSEGFLSWVRNGFNCSYNGVVSNMCFLFARKFHPNTLEPLLKLAPRVLGFGTSQVH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56858899 56860112 - Bda004390.1 Bda01g02064 2064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02064 301 Pfam Core-2/I-Branching enzyme 27 254 IPR003406 GO:0016020|GO:0016757
Bda01g02064 301 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 1 294 - -
Bda01g02064 301 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 1 294 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02064 - - - jre:109012531 477.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02064 Bda11g00105 CCT
Bda01g02064 Bda11g00105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02064 Bda-Chr1:56858899 Bda03g00151 Bda-Chr3:1266785 6.04E-121 dispersed
Bda14g00028 Bda-Chr14:255525 Bda01g02064 Bda-Chr1:56858899 1.54E-44 dispersed
Bda01g02064 Bda-Chr1:56858899 Bda01g01847 Bda-Chr1:54580775 8.05E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58