Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02068 ATGGTGTTTGCGGCTGATTCTGAGGAGGAGAGGTTACATAAGTTAATGGCGATGGGAAGCGAGAGATCGAAGCTTCTTCACAATTTCACTCTTCCGTGCTTGAAGTGGGGGAACCAGAAACATCTGAGGTGTATGAAGGTGAATTCCGCTGGGAGCGACGTTTCCGGGGCTGATCGCCGCCCTTCAGCTTCGAAATTGGAGAGCTTTGTTACGAGCCAGCGGCGGAAATCGGAGTCGGAGACACGTGAGTTCTTTAAGGATTCGGAGAAAAAGCTGAGCGCTTCGAAATTGGGAATCGGGACGAACGGTGACGACGGGATTGAGGCGATTGGAAGGAAGTTACTGTTTGATCTTCAAACCACCGCCGATAATCTGAAGAATACGATGTTGAGAGAAGAGATGGTCCCGGAGGAGGAGAAGGAGAATGATGACGCGGAGAAGATGCCGGCGGCGGTAGATGCAAAACCTTGGAATCTAAGGACTAGAAGAGGCGTTTCTAAGGCTCCAATATGTAATGGGGTAGGAGTTAAGGCGGCCTTGAAGATTGACGAAAGGAAATCTAATCAGTATTCGCCGTCGAGTAATGAAGGTGACGCGAAGTTGCCGAGACCGGGACTTGAGAAACTGGAGTGGCCGAAGTTCTCCGTGTCACTTTCAAAGAAAGAGATCGAGGAGGATTTCATTGAGATGTCGAAGCGCAGGCCGCCGAGGAGGCCCCAGAAGAGACCCAGAACCGTGCAAAAGCAGTTGGATATGATTTTTCCGGGATTGTGGTTATCGGAGATTACTGCTGATTCGTACAAGGTCCATGAGAACAAAGAAAATGTCAAGGTATACGAATCTCTTCCTTTCCCGCAAACCTACTTATTTTTGAAATCTATTATTTCATCCTTCGTTTAG 900 48.56 MVFAADSEEERLHKLMAMGSERSKLLHNFTLPCLKWGNQKHLRCMKVNSAGSDVSGADRRPSASKLESFVTSQRRKSESETREFFKDSEKKLSASKLGIGTNGDDGIEAIGRKLLFDLQTTADNLKNTMLREEMVPEEEKENDDAEKMPAAVDAKPWNLRTRRGVSKAPICNGVGVKAALKIDERKSNQYSPSSNEGDAKLPRPGLEKLEWPKFSVSLSKKEIEEDFIEMSKRRPPRRPQKRPRTVQKQLDMIFPGLWLSEITADSYKVHENKENVKVYESLPFPQTYLFLKSIISSFV 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56877836 56878820 + Bda004394.1 Bda01g02068 2068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02068 299 PANTHER OS01G0688600 PROTEIN 16 271 - -
Bda01g02068 299 PANTHER PUTATIVE (DUF1639)-RELATED 16 271 - -
Bda01g02068 299 MobiDBLite consensus disorder prediction 50 83 - -
Bda01g02068 299 Pfam Protein of unknown function (DUF1639) 218 267 IPR012438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02068 - - - csv:101205564 241.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02068 Bda-Chr1:56877836 Bda11g01791 Bda-Chr11:52837142 9.58E-30 dispersed
Bda01g02068 Bda-Chr1:56877836 Bda11g01105 Bda-Chr11:10861791 2.40E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g330 . . Bda01g02068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0819 Cone19ag0825 . Cone9ag0452 . . . . . . . . . Bpe02g02259 . . . . Cmo15g00959 . Cma15g00920 . Car15g00862 Cpe13g00400 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004927 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41