Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02070 ATGGAGGAGGAGGAGGACCAGCGCAATTTGAAAAAGAAGAAGTGGAAAAGGTGCAATGGTACGATAAATAACAGGAAGGCCGTGAGGTTGAGGTGCTCAGTACAGAACTATGATTGGGGCGTTGTAGGTGATAATTCGCATGTTTCGAGACTATTTTTTCTCAATTCAGGATTGCGTAGTGTTGCTAGGGGAAAGCCTTTTGCTGAGTTTTGGATCGGAACACATGAATCTGGACCGTCGTACGTCGTTCGCGGCCGTGCTGACGGTAGCTGGTTCGGTTCCCAGGGGTTAAGCCTTAAGGATTGGATTTCTGAGGATCCAGTTGTTCTGCTTGGTGAGAGGGTCGCGAAGAAATGGGGAGACGATCTTCCTTTTCTGTTCGAGGTTATCTCCGTTGAAAAGGCTTTATCCATACAGGCTCATCCGGATAAGGAATTGGCAAGAGCTCTCCACAAGTCACACCCTATTCTTTACAAAGATGATAATCACAAGCCCGAAATGGCATTGGCATTAACAGAGTTTCTGTACAGGGCGGGAGTCAATAGCAGATTTTTGAGGACCCTTGACTCATGA 573 46.95 MEEEEDQRNLKKKKWKRCNGTINNRKAVRLRCSVQNYDWGVVGDNSHVSRLFFLNSGLRSVARGKPFAEFWIGTHESGPSYVVRGRADGSWFGSQGLSLKDWISEDPVVLLGERVAKKWGDDLPFLFEVISVEKALSIQAHPDKELARALHKSHPILYKDDNHKPEMALALTEFLYRAGVNSRFLRTLDS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56883576 56891092 + Bda004396.1 Bda01g02070 2070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02070 190 PRINTS Phosphomannose isomerase type I signature 158 181 IPR016305 GO:0004476|GO:0009298
Bda01g02070 190 PRINTS Phosphomannose isomerase type I signature 30 48 IPR016305 GO:0004476|GO:0009298
Bda01g02070 190 PRINTS Phosphomannose isomerase type I signature 66 81 IPR016305 GO:0004476|GO:0009298
Bda01g02070 190 ProSitePatterns Phosphomannose isomerase type I signature 1. 158 166 IPR018050 GO:0004476
Bda01g02070 190 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 23 179 - -
Bda01g02070 190 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 23 179 IPR016305 GO:0004476|GO:0009298
Bda01g02070 190 SUPERFAMILY RmlC-like cupins 27 181 IPR011051 -
Bda01g02070 190 Pfam Phosphomannose isomerase type I, catalytic domain 29 176 IPR046457 -
Bda01g02070 190 Gene3D Jelly Rolls 31 189 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02070 K01809 manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8] - csv:101220595 227.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01167 Bda-Chr1:46874286 Bda01g02070 Bda-Chr1:56883576 1.51E-57 dispersed
Bda01g02070 Bda-Chr1:56883576 Bda11g01101 Bda-Chr11:10794953 9.58E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g329 Blo01g00502 . Bda01g02070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02261 . . . Cmo04g02163 Cmo15g00956 Cma04g02066 Cma15g00917 Car04g02006 Car15g00860 Cpe13g00402 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005332 2 4 2 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 0 1 1 1 3 1 0 40