Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02072 TGGTATGAGAAAAATTCAAAGGGCTTTGATATCTTCTGTAAACAATGGCTACCTGCAACTGGTGTTCCAATTAAAGCAGCCTTATATTTCTGCCATGGATATGGCGGTACTTGCACTTTCTTCTTCGAAGGAGTAGCCAGATTTATTGCTGCATCTGGGTATGCTGTTTATGCCATGAACTATCCTTGTTTTGGCCTCTCAGATGGTTTACATGGTTATATTCGAAGCTTCGATGAAATATTTATGTTAGGTCAATCCACGGGGGGAGCTGTTGCTCTCAAAGTTCACTTAAAGGAGCCACAAAACTGGGATGGAATAATTCTTGTGGCTCCAATGTGCAAAGAAAGTTCATTGCTCTTACTTGAAGTTATGTTTGAAACAATTGGAGAAGGTGAGTTCAAATCTTTCTTCTTTCCACTCTCTAAACTAATTAATTTTGTTGTCATATCATTTTGTACCATAATTCAGGTTTCGGCACCATTGCTGGTTCTTCATGGAGCAGCCGATAAGGTGACAGATCCAATGGTGAGCCAGTTTCTCTACGAAAAAGCCGTGGAGCATGTTATACGTGAACAAAACATGTGGGCTGCTTATGAAATTTTAGAACTATTTTGCGAATTTGTTCTTGCAAGAGTTCCTATTATTGAAAGTCAAAGAGAATGCCCAACAGAATTAAGAGAAGCTGTTTCAAGCATTATATTTGCTGCTCCTAGATGTTCGGATCTTCCAGATTTATTGCAGTTGAAGAATATGTTCACTACAAAATATGGAAAAGAATTTGTTTCTGCTGTGTCTGAGCTTCGTCCTGATTCTGGTGTCAACCGTACTGTTACAATAAAAACTTCTGATCTCTTTTTTATTCCGAATATAATTCTTTTCCAGATAATCGAAAAGCTTTCAGTTATTGCGCCACCTGGACATATAAAGCTAAAGGTATTAAAGGAAATAGCTGTGGAGTACAAAGTGAATTGGGATTCTTCCGATGCCGAAGCAGAATTCAGTAAAACACATGAGGATCTTCTGGTACACATTTTTCAAATAATTTTCTTTTTGATTTGCCAGGGTGGACCAAAGGACATACGGGGATCTTCCCTTTCTCAAGCTCCCATCAGGAAGGACTCACTCAAATCTTCTACTTCCAATGGAGCTGATCGAATTGAACCAGTAGACGATAAGCAAGCTTATGGATCAAGACCCATTAGCGAAAAACCTTCGTCGACTACAAAAGAAATCGAACCAATATTTAAAGATGAAGTTACAGGAAAAATAAACGATGTGAAAAGAGATGTAAGACCACAGTCATCTGATGTCCTGGAAAGAGCTCGAGCAGCCATAGCCTCTGCCGAAAGAGCAGCTGCCGCCGCCCGTGCTGCAGCCGGGCTTGTGAACACCGAGGGAGGAAGGTCTGTCTTAAAATGA 1419 40.17 WYEKNSKGFDIFCKQWLPATGVPIKAALYFCHGYGGTCTFFFEGVARFIAASGYAVYAMNYPCFGLSDGLHGYIRSFDEIFMLGQSTGGAVALKVHLKEPQNWDGIILVAPMCKESSLLLLEVMFETIGEGEFKSFFFPLSKLINFVVISFCTIIQVSAPLLVLHGAADKVTDPMVSQFLYEKAVEHVIREQNMWAAYEILELFCEFVLARVPIIESQRECPTELREAVSSIIFAAPRCSDLPDLLQLKNMFTTKYGKEFVSAVSELRPDSGVNRTVTIKTSDLFFIPNIILFQIIEKLSVIAPPGHIKLKVLKEIAVEYKVNWDSSDAEAEFSKTHEDLLVHIFQIIFFLICQGGPKDIRGSSLSQAPIRKDSLKSSTSNGADRIEPVDDKQAYGSRPISEKPSSTTKEIEPIFKDEVTGKINDVKRDVRPQSSDVLERARAAIASAERAAAAARAAAGLVNTEGGRSVLK 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56926574 56932603 + Bda004398.1 Bda01g02072 2072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02072 472 MobiDBLite consensus disorder prediction 371 411 - -
Bda01g02072 472 Pfam Serine aminopeptidase, S33 24 117 IPR022742 -
Bda01g02072 472 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 185 463 - -
Bda01g02072 472 Coils Coil 438 458 - -
Bda01g02072 472 Gene3D alpha/beta hydrolase 5 130 IPR029058 -
Bda01g02072 472 Pfam Regulator of Vps4 activity in the MVB pathway 185 281 IPR005061 GO:0015031
Bda01g02072 472 Gene3D - 175 333 IPR042277 -
Bda01g02072 472 SUPERFAMILY alpha/beta-Hydrolases 7 204 IPR029058 -
Bda01g02072 472 PANTHER IST1 FAMILY MEMBER 185 463 IPR005061 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02072 - - - qsu:112021724 283.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02072 Bda11g01154 CCT
Bda01g02072 Bda11g01154 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02072 Bda-Chr1:56926574 Bda11g00852 Bda-Chr11:8390767 1.49E-52 dispersed
Bda09g01157 Bda-Chr9:42348392 Bda01g02072 Bda-Chr1:56926574 3.00E-14 dispersed
Bda15g00167 Bda-Chr15:4236612 Bda01g02072 Bda-Chr1:56926574 7.15E-13 dispersed
Bda01g02072 Bda-Chr1:56926574 Bda11g01154 Bda-Chr11:11806041 4.44E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g317 Blo01g00499 Blo16g01067 Bda01g02072 Bda11g01154 Bpe13g01352 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01154 . . . Bma06g00753 . . . . Cma15g00989 . . . . . . . . . . . . . . . . . . . Csa05g01486 . Cme09g00795
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011875 1 1 0 1 1 1 1 1 2 1 2 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30