Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02090 ATGGCTGGGGAGATGTGTTTCAAACTGTACGTAGAGGCGTTAAAGGAAGAACGCCGGAAAATTACGGTTTTCCAGCGGGAACTGCCGCTCTGTTTAGAACTTATCACTCAAGCGATTGAGTCTTGTACGCAGCAGTTGTCAGGGACGACGACGGAGTGCTTTAATGGAGGACAATCTGAGTGCTCGGAGCAGACTTCCAGGGAAGGTCCGGTGTTGGAGGAATTTATTCCGGTCAAAAGGGCTCTATCTTCTGAGTTTTCCGGCGAAGAGAAAAAATCCCTGAAAATGAGAAAGGAGAGCAAGACTAGCGACAAGAAGAAAGCTGGTCAGTCGGATTGGCTCAAATCTGCTCAGCTATGGAATCAAGCTCCAGATCCTGACGTTAAGGAGGATGTACCGAACAAGACGGCGGTTGTGGAAGTCAAGAGAAATGGCGGAGCTTTCCGGCCATTCCACCGAGAGAAAATCATCGAAAAGACAAACCAATCCGACGGAAAAGCACCGACGGCAAATGCAAGATCAACGGCGGAAACATCTTCTCACAGCAGCATCAGACGCGAAGAGAAAGACGAACAGGGTAAAAGAAAGAACCGGCGGTGCTGGTCACCGGAGCTGCATCGCCGATTCTTGCGCGCTCTTCACCAGCTCGGAGGATCAAACGTGGCCACGCCAAAGCAGATTAGAGAACTGATGAAATTGGATGGTCTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATCGTTTGCATACCAGAAGATCGAGTCCTCCGGCGCACAACAGTAGCGTCCAACTGCCACCACAATATGTGGTAGTGGGTGGAATATGGGTGCCACCGCCGGACTATGCGGTGGCACCGGAGAGCACTGTTACCGGCGAGGTTAATGGAATGTACGTGGTACCAGCTTCGGTATCGGAGGCGTCAGGTTGTGGGGTTAAAAGGCCACAGCCAAAGCGATTAGTTCAGACGAACTCTGAAGGAAGAAAGGTCAGCCAAGGTGGAGATGGTGTTGTCCATTCAAATTCTCCGGCGACGTCGTCTTCCCACACTTCCACAGCTTCCCCTCCTCTTTGA 1077 50.7 MAGEMCFKLYVEALKEERRKITVFQRELPLCLELITQAIESCTQQLSGTTTECFNGGQSECSEQTSREGPVLEEFIPVKRALSSEFSGEEKKSLKMRKESKTSDKKKAGQSDWLKSAQLWNQAPDPDVKEDVPNKTAVVEVKRNGGAFRPFHREKIIEKTNQSDGKAPTANARSTAETSSHSSIRREEKDEQGKRKNRRCWSPELHRRFLRALHQLGGSNVATPKQIRELMKLDGLTNDEVKSHLQKYRLHTRRSSPPAHNSSVQLPPQYVVVGGIWVPPPDYAVAPESTVTGEVNGMYVVPASVSEASGCGVKRPQPKRLVQTNSEGRKVSQGGDGVVHSNSPATSSSHTSTASPPL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57054572 57056116 - Bda004418.1 Bda01g02090 2090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02090 358 MobiDBLite consensus disorder prediction 150 199 - -
Bda01g02090 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 354 IPR044787 GO:0003700|GO:0006355
Bda01g02090 358 MobiDBLite consensus disorder prediction 162 179 - -
Bda01g02090 358 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Bda01g02090 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 253 IPR017930 -
Bda01g02090 358 Pfam Myb-like DNA-binding domain 198 249 IPR001005 -
Bda01g02090 358 MobiDBLite consensus disorder prediction 87 135 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 307 358 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 180 199 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 319 358 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 87 111 - -
Bda01g02090 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 251 IPR006447 GO:0003677
Bda01g02090 358 PANTHER TRANSCRIPTION FACTOR HHO2 8 354 - -
Bda01g02090 358 Gene3D - 195 253 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02090 Bda07g01528 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02090 Bda-Chr1:57054572 Bda11g00125 Bda-Chr11:1693719 9.06E-62 dispersed
Bda01g02090 Bda-Chr1:57054572 Bda07g01528 Bda-Chr7:28404371 1.15E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15505 PF00249 Myb_DNA-binding 2.80E-07 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02090 - - vvi:100257723 361.688