Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02090 ATGGCTGGGGAGATGTGTTTCAAACTGTACGTAGAGGCGTTAAAGGAAGAACGCCGGAAAATTACGGTTTTCCAGCGGGAACTGCCGCTCTGTTTAGAACTTATCACTCAAGCGATTGAGTCTTGTACGCAGCAGTTGTCAGGGACGACGACGGAGTGCTTTAATGGAGGACAATCTGAGTGCTCGGAGCAGACTTCCAGGGAAGGTCCGGTGTTGGAGGAATTTATTCCGGTCAAAAGGGCTCTATCTTCTGAGTTTTCCGGCGAAGAGAAAAAATCCCTGAAAATGAGAAAGGAGAGCAAGACTAGCGACAAGAAGAAAGCTGGTCAGTCGGATTGGCTCAAATCTGCTCAGCTATGGAATCAAGCTCCAGATCCTGACGTTAAGGAGGATGTACCGAACAAGACGGCGGTTGTGGAAGTCAAGAGAAATGGCGGAGCTTTCCGGCCATTCCACCGAGAGAAAATCATCGAAAAGACAAACCAATCCGACGGAAAAGCACCGACGGCAAATGCAAGATCAACGGCGGAAACATCTTCTCACAGCAGCATCAGACGCGAAGAGAAAGACGAACAGGGTAAAAGAAAGAACCGGCGGTGCTGGTCACCGGAGCTGCATCGCCGATTCTTGCGCGCTCTTCACCAGCTCGGAGGATCAAACGTGGCCACGCCAAAGCAGATTAGAGAACTGATGAAATTGGATGGTCTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATCGTTTGCATACCAGAAGATCGAGTCCTCCGGCGCACAACAGTAGCGTCCAACTGCCACCACAATATGTGGTAGTGGGTGGAATATGGGTGCCACCGCCGGACTATGCGGTGGCACCGGAGAGCACTGTTACCGGCGAGGTTAATGGAATGTACGTGGTACCAGCTTCGGTATCGGAGGCGTCAGGTTGTGGGGTTAAAAGGCCACAGCCAAAGCGATTAGTTCAGACGAACTCTGAAGGAAGAAAGGTCAGCCAAGGTGGAGATGGTGTTGTCCATTCAAATTCTCCGGCGACGTCGTCTTCCCACACTTCCACAGCTTCCCCTCCTCTTTGA 1077 50.7 MAGEMCFKLYVEALKEERRKITVFQRELPLCLELITQAIESCTQQLSGTTTECFNGGQSECSEQTSREGPVLEEFIPVKRALSSEFSGEEKKSLKMRKESKTSDKKKAGQSDWLKSAQLWNQAPDPDVKEDVPNKTAVVEVKRNGGAFRPFHREKIIEKTNQSDGKAPTANARSTAETSSHSSIRREEKDEQGKRKNRRCWSPELHRRFLRALHQLGGSNVATPKQIRELMKLDGLTNDEVKSHLQKYRLHTRRSSPPAHNSSVQLPPQYVVVGGIWVPPPDYAVAPESTVTGEVNGMYVVPASVSEASGCGVKRPQPKRLVQTNSEGRKVSQGGDGVVHSNSPATSSSHTSTASPPL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57054572 57056116 - Bda004418.1 Bda01g02090 2090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02090 358 MobiDBLite consensus disorder prediction 150 199 - -
Bda01g02090 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 354 IPR044787 GO:0003700|GO:0006355
Bda01g02090 358 MobiDBLite consensus disorder prediction 162 179 - -
Bda01g02090 358 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Bda01g02090 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 253 IPR017930 -
Bda01g02090 358 Pfam Myb-like DNA-binding domain 198 249 IPR001005 -
Bda01g02090 358 MobiDBLite consensus disorder prediction 87 135 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 307 358 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 180 199 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 319 358 - -
Bda01g02090 358 MobiDBLite consensus disorder prediction 87 111 - -
Bda01g02090 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 251 IPR006447 GO:0003677
Bda01g02090 358 PANTHER TRANSCRIPTION FACTOR HHO2 8 354 - -
Bda01g02090 358 Gene3D - 195 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02090 - - - vvi:100257723 361.688
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02090 Bda07g01528 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02090 Bda-Chr1:57054572 Bda11g00125 Bda-Chr11:1693719 9.06E-62 dispersed
Bda01g02090 Bda-Chr1:57054572 Bda07g01528 Bda-Chr7:28404371 1.15E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15505 PF00249 Myb_DNA-binding 2.80E-07 CL0123 Bda TF