Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02092 ATGGATGGGAGTTGCATCGATGAGAGTACAGCTAGCGACACTACGTCTACTTCACCTGTTACCAAGTATTCTTCGCCGGCGAGTCTACGTCGTCTTGGTAGCGGAGCCAGCGTTATCATAGACTCGGATTTTAATGGTGTGGAGGCGGAGTCCCGGAAGCTGCCGTCTTCTCGGTTCAAAGGCGTCGTCCCCCAGCCGAACGGACGGTGGGGATCTCAAATCTACGAGAAGCACCAGCGAGTATGGCTCGGCACTTTCAACGAAGAAGACGAAGCTGCAAGGGCATACGACGTCGCCGCCAGGCGATTCCGCGGCCGTGATGCTGTTACGAACTTTAAGCGGTCGGAGATCGGAGAAGACGAAACGGAAGAGGCGTTTTTGGTTTCCCATTCGAAGGCTGAGATCGTCGATATGCTGCGTAAGCATACATACAAAGAGGAGCTTCTGCAGTGCAAGAGAAACTACAAGGCTAACGCCGTGGACGGGAAACTGACCAGAACGGATTCAGTGTTCGGAAAATCGTTGATATCGGTTCAGCGTGAGCTTCTGTTCGAAAAGGCAGTGACGCCGAGCGACGTCGGAAAGCTGAATCGGCTCGTCATCCCGAAGCAATACGCCGAGAAACACTTCCCGTTGCAGGCCGCCGGAACCGATTCGTGTAGAGGTTTTCTTTTGAATTTCGAGGATGCCGGAGGTAAAGTATGGCGGTTCAGGTATTCATACTGGAACAGTAGCCAGAGCTACGTGCTGACCAAAGGTTGGAGCCGGTTCGTGAAGGAGAAGAACATGAACTCCGGTGACATTGTTAGCTTTTTCCGATCAACCGAAGGAGATAAGCAGCTTTATATTGGATCGAAAAAGAGGACCACAAATCCTGTCCAGACAGTGAGACTGTTTGGAGTGAATATAATGGAAGTAGAAGGAAGAGGTCGAGAAGAGAACAATGGAGGATGTAACGAGAAGAGAAGAAGAGATATGGAGCAGTGGGCAGTAGAACGTAGGAAGAAACAAAAACTATTTGGAGTTCTGTAA 1032 50.48 MDGSCIDESTASDTTSTSPVTKYSSPASLRRLGSGASVIIDSDFNGVEAESRKLPSSRFKGVVPQPNGRWGSQIYEKHQRVWLGTFNEEDEAARAYDVAARRFRGRDAVTNFKRSEIGEDETEEAFLVSHSKAEIVDMLRKHTYKEELLQCKRNYKANAVDGKLTRTDSVFGKSLISVQRELLFEKAVTPSDVGKLNRLVIPKQYAEKHFPLQAAGTDSCRGFLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNMNSGDIVSFFRSTEGDKQLYIGSKKRTTNPVQTVRLFGVNIMEVEGRGREENNGGCNEKRRRDMEQWAVERRKKQKLFGVL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57063080 57064111 - Bda004420.1 Bda01g02092 2092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02092 343 SMART B3_2 184 287 IPR003340 GO:0003677
Bda01g02092 343 CDD AP2 57 112 IPR001471 GO:0003700|GO:0006355
Bda01g02092 343 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Bda01g02092 343 ProSiteProfiles B3 DNA-binding domain profile. 184 289 IPR003340 GO:0003677
Bda01g02092 343 SUPERFAMILY DNA-binding pseudobarrel domain 182 283 IPR015300 -
Bda01g02092 343 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Bda01g02092 343 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Bda01g02092 343 MobiDBLite consensus disorder prediction 1 24 - -
Bda01g02092 343 CDD B3_DNA 183 274 IPR003340 GO:0003677
Bda01g02092 343 Pfam B3 DNA binding domain 184 284 IPR003340 GO:0003677
Bda01g02092 343 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 343 IPR044800 GO:0003700
Bda01g02092 343 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 343 - -
Bda01g02092 343 Gene3D - 175 296 IPR015300 -
Bda01g02092 343 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
Bda01g02092 343 Pfam AP2 domain 58 105 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02092 Bda07g01526 CCT
Bda01g02092 Bda07g01526 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02092 Bda-Chr1:57063080 Bda10g01143 Bda-Chr10:45485378 6.28E-154 dispersed
Bda01g02092 Bda-Chr1:57063080 Bda07g01526 Bda-Chr7:28386869 2.55E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15506 PF02362 B3 5.00E-26 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02092 K09287 - vvi:100262843 424.476