Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g02092 | ATGGATGGGAGTTGCATCGATGAGAGTACAGCTAGCGACACTACGTCTACTTCACCTGTTACCAAGTATTCTTCGCCGGCGAGTCTACGTCGTCTTGGTAGCGGAGCCAGCGTTATCATAGACTCGGATTTTAATGGTGTGGAGGCGGAGTCCCGGAAGCTGCCGTCTTCTCGGTTCAAAGGCGTCGTCCCCCAGCCGAACGGACGGTGGGGATCTCAAATCTACGAGAAGCACCAGCGAGTATGGCTCGGCACTTTCAACGAAGAAGACGAAGCTGCAAGGGCATACGACGTCGCCGCCAGGCGATTCCGCGGCCGTGATGCTGTTACGAACTTTAAGCGGTCGGAGATCGGAGAAGACGAAACGGAAGAGGCGTTTTTGGTTTCCCATTCGAAGGCTGAGATCGTCGATATGCTGCGTAAGCATACATACAAAGAGGAGCTTCTGCAGTGCAAGAGAAACTACAAGGCTAACGCCGTGGACGGGAAACTGACCAGAACGGATTCAGTGTTCGGAAAATCGTTGATATCGGTTCAGCGTGAGCTTCTGTTCGAAAAGGCAGTGACGCCGAGCGACGTCGGAAAGCTGAATCGGCTCGTCATCCCGAAGCAATACGCCGAGAAACACTTCCCGTTGCAGGCCGCCGGAACCGATTCGTGTAGAGGTTTTCTTTTGAATTTCGAGGATGCCGGAGGTAAAGTATGGCGGTTCAGGTATTCATACTGGAACAGTAGCCAGAGCTACGTGCTGACCAAAGGTTGGAGCCGGTTCGTGAAGGAGAAGAACATGAACTCCGGTGACATTGTTAGCTTTTTCCGATCAACCGAAGGAGATAAGCAGCTTTATATTGGATCGAAAAAGAGGACCACAAATCCTGTCCAGACAGTGAGACTGTTTGGAGTGAATATAATGGAAGTAGAAGGAAGAGGTCGAGAAGAGAACAATGGAGGATGTAACGAGAAGAGAAGAAGAGATATGGAGCAGTGGGCAGTAGAACGTAGGAAGAAACAAAAACTATTTGGAGTTCTGTAA | 1032 | 50.48 | MDGSCIDESTASDTTSTSPVTKYSSPASLRRLGSGASVIIDSDFNGVEAESRKLPSSRFKGVVPQPNGRWGSQIYEKHQRVWLGTFNEEDEAARAYDVAARRFRGRDAVTNFKRSEIGEDETEEAFLVSHSKAEIVDMLRKHTYKEELLQCKRNYKANAVDGKLTRTDSVFGKSLISVQRELLFEKAVTPSDVGKLNRLVIPKQYAEKHFPLQAAGTDSCRGFLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNMNSGDIVSFFRSTEGDKQLYIGSKKRTTNPVQTVRLFGVNIMEVEGRGREENNGGCNEKRRRDMEQWAVERRKKQKLFGVL | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57063080 | 57064111 | - | Bda004420.1 | Bda01g02092 | 2092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g02092 | 343 | SMART | B3_2 | 184 | 287 | IPR003340 | GO:0003677 | |
Bda01g02092 | 343 | CDD | AP2 | 57 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g02092 | 343 | Gene3D | AP2/ERF domain | 57 | 114 | IPR036955 | GO:0003700|GO:0006355 | |
Bda01g02092 | 343 | ProSiteProfiles | B3 DNA-binding domain profile. | 184 | 289 | IPR003340 | GO:0003677 | |
Bda01g02092 | 343 | SUPERFAMILY | DNA-binding pseudobarrel domain | 182 | 283 | IPR015300 | - | |
Bda01g02092 | 343 | ProSiteProfiles | AP2/ERF domain profile. | 58 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g02092 | 343 | SUPERFAMILY | DNA-binding domain | 57 | 114 | IPR016177 | GO:0003677 | |
Bda01g02092 | 343 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Bda01g02092 | 343 | CDD | B3_DNA | 183 | 274 | IPR003340 | GO:0003677 | |
Bda01g02092 | 343 | Pfam | B3 DNA binding domain | 184 | 284 | IPR003340 | GO:0003677 | |
Bda01g02092 | 343 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 343 | IPR044800 | GO:0003700 | |
Bda01g02092 | 343 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 1 | 343 | - | - | |
Bda01g02092 | 343 | Gene3D | - | 175 | 296 | IPR015300 | - | |
Bda01g02092 | 343 | SMART | rav1_2 | 58 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g02092 | 343 | Pfam | AP2 domain | 58 | 105 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g02092 | Bda07g01526 | CCT | |
Bda01g02092 | Bda07g01526 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g02092 | Bda-Chr1:57063080 | Bda10g01143 | Bda-Chr10:45485378 | 6.28E-154 | dispersed | |
Bda01g02092 | Bda-Chr1:57063080 | Bda07g01526 | Bda-Chr7:28386869 | 2.55E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15506 | PF02362 | B3 | 5.00E-26 | CL0405 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g02092 | K09287 | - | vvi:100262843 | 424.476 |