Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02099 ATGGTATTTGCCCCATTATGGCTTTTTCATGCAGTTGTAGCTCGGGGCAGATTTTCTCTTCCTGCTCCGGCATTACCTCATGATCGCCATTGGGCACCGTGGCATGCTGTCATGGCTATACCATTGCTTGTTGCTTTCGAACTACTTCTTTGCATCCATCTAGTAAGTGGGGATGTTGTAAACTTGAAGATTGTTTTCACTCCTCTATTTGTCTTTGAAATAGCAATTTTGATCGATAATGTTAGGATGTGCAAGGCTTTGATGCCTGGAGAGGAGGAAACTATCAGTGATGAAATAATATGGAAGACACTCCCCCATTTCTGGGTTGCAATTTCTATGGTTTTCTTCATTGCTGCTACAATCTTCACTCTTTTGAAGCTAAGTGGAAATGCAGCTTCTCTAGGCTGGTGGGACTTATTTATTAACTTTGGAATTGCTGAGTGCTTTGCTTTTCTTGTTTTCACAAAGTGGTATAATCCAGTAATTCATGGGAATGCTTTTAGAGAACCAAATAGGCGTTCACATACTATTCGAAACCTTGACTGGATGAGTGGCAGTATGGTTTCTTCTGATGAAGATCAGCATCAAAGTCAATTATGCAACTTACAAGACCTGGGTGGGCATTTAATAAAAGTTCTGATGATCATTTTCCAAATCTTGCTTTTTATGCGCTTGGAGGGAACACCAACAAGTGCTACACATATCCCTTGGAAGATTCTTTTTATTCCTCTTTATTTAATTCAAGGAATAGGGGTTATATTTGCTACCCATAGATTGGTAGAAAAAATTGTTCTACTATTTAGGGGATCCACTTCTCATAGATATTTTCTTCTATCGTCAAAAGCTCATGAATTTTTTGGGTTCTTGCACCATGGATCAAGATTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTAAAGAGGAACAAGCTAAACTTTATTGTGACGGATCTTCTGGGTCAGTATTCTTTACACAGATTGTGCAACTTGTTCCGTATAATACTTTCTCACTGGAGGCTGTGAAGCAAATGCCAAAATCTAATCTCATTGATGAGATTTGGAGATTACAAGCTGCTCTCAGTGAACAAACTGAAATTACGAAGTTTAGTCAGCAGGAGCATGAAAGGCTACAAAATGAAAAAATTCTTTGTCGAATATGCTTTGCAGAGGAGATTAACGTGGTCCTCCTTCCCTGTCGGCATCACATTCTTTGCAGCACTTGCTGTGAGAAGTGTACAAGGTGCCCGATTTGTCGGGAGTCTATTGAAAGAGGAATGCTCGTCCATGATGTATAG 1293 39.83 MVFAPLWLFHAVVARGRFSLPAPALPHDRHWAPWHAVMAIPLLVAFELLLCIHLVSGDVVNLKIVFTPLFVFEIAILIDNVRMCKALMPGEEETISDEIIWKTLPHFWVAISMVFFIAATIFTLLKLSGNAASLGWWDLFINFGIAECFAFLVFTKWYNPVIHGNAFREPNRRSHTIRNLDWMSGSMVSSDEDQHQSQLCNLQDLGGHLIKVLMIIFQILLFMRLEGTPTSATHIPWKILFIPLYLIQGIGVIFATHRLVEKIVLLFRGSTSHRYFLLSSKAHEFFGFLHHGSRLLGWWSIDEGSKEEQAKLYCDGSSGSVFFTQIVQLVPYNTFSLEAVKQMPKSNLIDEIWRLQAALSEQTEITKFSQQEHERLQNEKILCRICFAEEINVVLLPCRHHILCSTCCEKCTRCPICRESIERGMLVHDV 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57097521 57102323 - Bda004427.1 Bda01g02099 2099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02099 430 Pfam Zinc finger, C3HC4 type (RING finger) 381 423 - -
Bda01g02099 430 ProSiteProfiles Zinc finger RING-type profile. 383 418 IPR001841 -
Bda01g02099 430 SUPERFAMILY RING/U-box 374 422 - -
Bda01g02099 430 Pfam Transmembrane Fragile-X-F protein 1 246 IPR019396 -
Bda01g02099 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 427 IPR013083 -
Bda01g02099 430 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 430 - -
Bda01g02099 430 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02099 Bda-Chr1:57097521 Bda15g00656 Bda-Chr15:10037769 4.37E-166 dispersed
Bda01g02099 Bda-Chr1:57097521 Bda06g00490 Bda-Chr6:6944810 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02099 - - vvi:100249082 638.647