Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02101 ATGCAAGGGTTTCCGGACCAGTTTCTAATTCAACATCACGAGCAAAAAAACAGCGATGTGTACGGAGGAGGAGGATTGATTTTCCCTGAAGTTTCACCGGTTTTACACCCATGGTCGCTACCGCAAGTTCATCCCTTTAATCCGGCCCAGTTTGCCCCAACTCCGGTTCGAGATCACAACACGTTTCTATCCCCTCCTTCGAACTCATATGATGGTTTTTTCAATCGAAGAGCTCCTGCTCTTCAGTTTGCATACGAAGTTCCGTCCTTAGACCACCTCAGAATCCTATCAAACTCACTTGGACAACAGATTGAAACCGGTTCGGGACCTTTTGGTCTGCAATCGGAACTGGGGAAGATGACTGCTCAAGAAATAATGGACGCTAAGGCCCTCTTTGCTTCAAAAAGCCATAGCGAGGCTGAGCGAAGAAGAAGAGAGAGAATCAACAACCATCTTGCTAAATTGCGCAGTTTACTACCCAACACCACTAAAACAGATAAAGCTTCGTTACTAGCAGAAGTAATACAACACGTTAAAGAACTTAAACGAGAGACTTCGTTGATAGCAGAAACAAGTCCAGTTCCGACGGAAATGGATGAACTGACAGTTGATGCATCAGACGAAGATGGTAAATTTGTGATCAAAGCCTCTCTTTGTTGCGAGGACAGATCTGATCTTTTGCCGGATCTCATAAAAACGTTAAAATCACTGCGTTTAAGAACAATGAAAGCTGAAATAACGACACTTGGGGGAAGAGTGAAGAACGTGTTGTTCGTCACTGGCGAAGCAGATTCAGTTAGCGACGGCGAGCAAATACAACAGCAATACTGTATCAGCTCGATTCAAGAAGCTCTCAAGGCAGTGATGGAGAAGGCCAGTGGAGATCGTCATGAGTCTTCTTCTGGAAATGTGAAGAGACAAAGGACTAACAATATTAATATCCTTTAA 948 44.09 MQGFPDQFLIQHHEQKNSDVYGGGGLIFPEVSPVLHPWSLPQVHPFNPAQFAPTPVRDHNTFLSPPSNSYDGFFNRRAPALQFAYEVPSLDHLRILSNSLGQQIETGSGPFGLQSELGKMTAQEIMDAKALFASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRETSLIAETSPVPTEMDELTVDASDEDGKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTMKAEITTLGGRVKNVLFVTGEADSVSDGEQIQQQYCISSIQEALKAVMEKASGDRHESSSGNVKRQRTNNINIL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57108307 57109949 - Bda004429.1 Bda01g02101 2101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02101 315 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Bda01g02101 315 Gene3D - 132 187 IPR036638 GO:0046983
Bda01g02101 315 PANTHER TRANSCRIPTION FACTOR BHLH30 51 315 IPR045847 GO:0003700|GO:0006355
Bda01g02101 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 187 IPR036638 GO:0046983
Bda01g02101 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Bda01g02101 315 PANTHER TRANSCRIPTION FACTOR BHLH30 51 315 - -
Bda01g02101 315 SMART finulus 138 187 IPR011598 GO:0046983
Bda01g02101 315 CDD bHLH_AtAIG1_like 127 205 - -
Bda01g02101 315 MobiDBLite consensus disorder prediction 291 315 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02101 Bda11g01131 CCT
Bda01g02101 Bda11g01131 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02101 Bda-Chr1:57108307 Bda03g00638 Bda-Chr3:5431357 4.55E-45 dispersed
Bda10g01120 Bda-Chr10:45186331 Bda01g02101 Bda-Chr1:57108307 2.95E-130 transposed
Bda01g00912 Bda-Chr1:42151035 Bda01g02101 Bda-Chr1:57108307 3.37E-35 transposed
Bda01g02101 Bda-Chr1:57108307 Bda11g01131 Bda-Chr11:11301471 1.13E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15507 PF00010 HLH 2.00E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02101 - - jre:108993280 456.062