Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02111 ATGGAGGTAAGAAGAGAGAGAGTGTATTTGTGTTGTTTGGCTCTGTCTAGCTTATGGGCTGCTGCAAATTGCTTGCTTTCTGCCAAAGGAGTAAATTACGAAGTTCAAGCTTTAATGGGAATCAAGGCAGCTCTGAAGGATCCTCACTCTGTTCTGAACTGGGATGAAAATGCTGTGGATCCATGTAGCTGGAGTATGATCACTTGCTCTGCTGATAACTCTGTCATTGGTCTAGGAGCTCCAAGCCAGAATTTTTCTGGCAGTCTTTCACCCAGTATAGGAAACTTGACAAATCTGCAGTTTGTGATGCTTCAGGACAATAATATATCTGGGAAGATCCCATCTGAAATTAGCAAGTTATCGAATCTTCAAACGCTGTACCTCTCGAGTAACTTCTTCTCCGGTGTAATTCCGAGCTCTCTCTCCCGTTTGAACAATCTCCAGTACCTGAGGCTTAACAACAACACTCTTTCGGGTGCTATTCCTTCGTCATTCTCCAACATGTCCCAGCTAGTCTTGCTGGACCTTTCGTATAATAACTTGAGCGGTCAAGTACCCTTGTTAATGGCTAAATCATTCAATTTGGCTGGAAATCCTCTGATATGTGGCGGCAGAGCAGAGCAAGACTGCGATGGAATGATGATGCCACTATCTTTGGCAGTCAATTCCTCTCAAAGTTCTCAATCTTTAAAAAGACCAAAAGGCCAGAAAATTGCTCTAGCATTTGGGTCTAGCTTAGGCTCCATTTGTCTGCTAACTTTGGGCTATGGCTTCTTCTTCTGGTGGAGGCAAAGGCAAAACCAACAGATATTCTTCGAATTCAATGAGCCTCATCACGAACAAGTTTGCTTAGGAAATCTGAAGAAATTCCACTTCCGAGAACTCCAAAATGCAACCAACAATTTCAGCAGCAAGAACCTGATCGGGAAGGGGGGATTCGGAAATGTATACAAAGGAATTCTTCAAGACGGAAGCGTGGTGGCGATCAAAAGACTGAAAGAAGGGAACGCCATCGGAGGGGAGATCCAGTTTCAGACTGAATTAGAGATGATTAGCTTAGCAGTTCATCGGAATCTCCTCCGACTGTATGGGTTTTGCACGACGGCTTCTGAGAGACTCCTTGTTTATCCATACATGTCTAATGGAAGCGTTGCTTCCCGCCTCAAAGCAAAACCAGCCCTAAATTGGGGAACAAGAAAGAGAATCGCCTTAGGAGCAGCAAGAGGGTTGTTATACTTGCACGAACAGTGCGACCCCAAAATTATTCATCGCGATGTTAAGGCTGCAAACATACTGCTTGATGATTATTGCGAGGCTGTGGTCGGAGATTTCGGGCTTGCAAAACTGTTAGACCATCGAGATTCCCATGTGACAACTGCCGTGAGAGGAACCGTCGGCCACATTGCACCAGAGTATTTATCGACCGGCCAATCCTCCGAGAAGACAGACGTTTTCGGATTTGGAATTCTCCTTCTCGAGTTGATTTCCAGCCAGAGAGCTCTTGAATTTGCTAAAGCTGCGAATCAAAAAGGCGCCATGCTTGATCTGGTTAAGAAAATTCACCAAGAGGGGAAGCTAGAACAGCTAGTTGACAAGGATCTGAAAAGTAATTACGACCGAATTGAGCTCGAGGAAATAGTTCGAGTAGCTCTGTTGTGCACACAATTTCTTCCAATCAATCGCCCGAAGATGTCTGAAGTGGTTCGAATGCTCGAAGGAGACGGATTGGCCGAAAAATGGGAGGCTTTGCAAAGAGCAGACTCAAGTAGGAGTAGAGCCAACGATTTCTCGTCGTCGGAGCATTACTCCGATCTTGCCGATGATTCTTCATTGCTTACACAAGCAATGGAGCTTTCTGGACCTAGATAA 1869 45.1 MEVRRERVYLCCLALSSLWAAANCLLSAKGVNYEVQALMGIKAALKDPHSVLNWDENAVDPCSWSMITCSADNSVIGLGAPSQNFSGSLSPSIGNLTNLQFVMLQDNNISGKIPSEISKLSNLQTLYLSSNFFSGVIPSSLSRLNNLQYLRLNNNTLSGAIPSSFSNMSQLVLLDLSYNNLSGQVPLLMAKSFNLAGNPLICGGRAEQDCDGMMMPLSLAVNSSQSSQSLKRPKGQKIALAFGSSLGSICLLTLGYGFFFWWRQRQNQQIFFEFNEPHHEQVCLGNLKKFHFRELQNATNNFSSKNLIGKGGFGNVYKGILQDGSVVAIKRLKEGNAIGGEIQFQTELEMISLAVHRNLLRLYGFCTTASERLLVYPYMSNGSVASRLKAKPALNWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISSQRALEFAKAANQKGAMLDLVKKIHQEGKLEQLVDKDLKSNYDRIELEEIVRVALLCTQFLPINRPKMSEVVRMLEGDGLAEKWEALQRADSSRSRANDFSSSEHYSDLADDSSLLTQAMELSGPR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57168550 57171315 + Bda004442.1 Bda01g02111 2111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02111 622 SMART serkin_6 302 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02111 622 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Bda01g02111 622 MobiDBLite consensus disorder prediction 586 608 - -
Bda01g02111 622 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Bda01g02111 622 SUPERFAMILY Protein kinase-like (PK-like) 280 572 IPR011009 -
Bda01g02111 622 MobiDBLite consensus disorder prediction 589 608 - -
Bda01g02111 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 622 - -
Bda01g02111 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Bda01g02111 622 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Bda01g02111 622 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 4 622 - -
Bda01g02111 622 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Bda01g02111 622 SUPERFAMILY L domain-like 34 197 - -
Bda01g02111 622 Pfam Protein kinase domain 303 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02111 622 Gene3D Transferase(Phosphotransferase) domain 1 379 591 - -
Bda01g02111 622 ProSiteProfiles Protein kinase domain profile. 302 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02111 622 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02111 Bda-Chr1:57168550 Bda09g00911 Bda-Chr9:25761206 0 dispersed
Bda01g02111 Bda-Chr1:57168550 Bda03g00411 Bda-Chr3:3543626 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69473 PF00069 Pkinase 4.50E-43 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02111 - - csin:114282611 955.281