Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02113 ATGGATTTAGGTGGGAAGGACGATTATGAACTAGAAAACAGAACTGAGAATTCTGTCAACTGTTCTCCAAGTATGTCCTCTGGGTGGCGATTTGGTGGAGCCCAGCTCTTGAAAACGTCAATGGGTTTGGTTAACCCCGCAAATTCCTCTGGGAAAGAGGATCTAATTTTTCCTCCATGTTCATCTGCTTCGATGGTGGATTCTTTTGGTCCAAACTTCAATGGTGGATTTTTTGATCTCTACAGTAACGTTAGTTCTTCAAACCCTGTTGGAATTAGCAGAGACAGTGCAGGTTCAATGAGAAGAACTTCTGATAGAACTCTTGATATGAGTTGGAACCCACCAAATCAAACGAGAGGAAGTAATTTACCCGTTTTCACTCAACCGAGCTTACCTCAATTTCCGGCTGATTCTGCATTCATCGAGCGGGCAGCTAGATTATCCTGCTTCAATGGTGGGAATCTTATGGAAATAGCTAATCCTTTCGGTATTCCTCAATCCATGGCTCTTTATTCTTGGAGTTCGGAGACGAATCGGGGCAATCAAGAAATTAACTCTATTGACGGGATGAGATTAGCTACTGTGGGGCAACCAAAAAAAAAAGGGATTAGTGATATAGGAGAAGCCTCCATGGATGTTTGTTTGGAGCATGGCTCTGAGAATCCTGAGAATGATGGAAAAAATGAGAACCTTCTCAGTCCTCACAATGAAGAAAAACGCACTATCGGCGGGTCAGGCGGTGAATCGGAAGACGAGATGAGTGGTGGTGCTCAAGATGAGCCGTCAACGGCAGAGGGTAGAGAAGAAGAACCTTCCGGCAAGGGAATCGGATCCAAAAAAAGGAAGAGGGTTAGGCAGAACACTGGGCTTGATCAAGCCAAAGATGGCGAATCTGCGAATGATGATAAGGAGATTGAACTGAAGGACGATCCAAACCCATATACAGTTGCCAACAAATCTACTGGAAAACACAGTAAACAAGGATCTCAAGCATCCGATCCGCCAAAGGAAGAATACATTCACGTTAGAGCACGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCCGAAAGGGTTAGAAGGGAGAAGATCAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTTCCGGGTTGCAGCAAGGTCACCGGCAAGGCGGTGATGTTAGACGAAATAATAAATTACGTGCAGTCGCTCCAACGGCAAGTAGAATTTTTATCGATGAAACTCGCCACTGTCAATCCGAGGATGGATTTCAATATAGATGGGCTTGCCAAAGATATTCTTCAAGCAAGGGCTGGTTCATCATCTGCGTTGGGCTATTCTCCAGACATATCTATGGCTTATCCTCCATTACAACCATCTCAACACGGACTTCTTTCCTCGGGTGTTCACTGCATCGGGAGCTCTTCCCAGATTCTACGGAGAACGCTTTCTTCCCACTTGACGACGCCGATGACCGGTGGATTTAAGGAGCCCTCTCAGCTACCAAATGTGTGGGAGGATGAGCTCCACCACGTTTTCCAAATGAGCTATGCAACTGCTGCTGCTTCGAATAGCCAAAGTGTTGATGGTAAAATGTCTTAG 1584 45.45 MDLGGKDDYELENRTENSVNCSPSMSSGWRFGGAQLLKTSMGLVNPANSSGKEDLIFPPCSSASMVDSFGPNFNGGFFDLYSNVSSSNPVGISRDSAGSMRRTSDRTLDMSWNPPNQTRGSNLPVFTQPSLPQFPADSAFIERAARLSCFNGGNLMEIANPFGIPQSMALYSWSSETNRGNQEINSIDGMRLATVGQPKKKGISDIGEASMDVCLEHGSENPENDGKNENLLSPHNEEKRTIGGSGGESEDEMSGGAQDEPSTAEGREEEPSGKGIGSKKRKRVRQNTGLDQAKDGESANDDKEIELKDDPNPYTVANKSTGKHSKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIDGLAKDILQARAGSSSALGYSPDISMAYPPLQPSQHGLLSSGVHCIGSSSQILRRTLSSHLTTPMTGGFKEPSQLPNVWEDELHHVFQMSYATAAASNSQSVDGKMS 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57180782 57182913 + Bda004444.1 Bda01g02113 2113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02113 527 Gene3D - 345 417 IPR036638 GO:0046983
Bda01g02113 527 PANTHER TRANSCRIPTION FACTOR BHLH49 44 526 - -
Bda01g02113 527 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983
Bda01g02113 527 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 526 IPR024097 GO:0006355
Bda01g02113 527 MobiDBLite consensus disorder prediction 218 246 - -
Bda01g02113 527 MobiDBLite consensus disorder prediction 1 24 - -
Bda01g02113 527 MobiDBLite consensus disorder prediction 216 336 - -
Bda01g02113 527 SMART finulus 354 404 IPR011598 GO:0046983
Bda01g02113 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983
Bda01g02113 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983
Bda01g02113 527 MobiDBLite consensus disorder prediction 262 277 - -
Bda01g02113 527 MobiDBLite consensus disorder prediction 314 329 - -
Bda01g02113 527 MobiDBLite consensus disorder prediction 284 310 - -
Bda01g02113 527 CDD bHLH_AtBPE_like 338 423 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02113 Bda11g01162 CCT
Bda01g02113 Bda11g01162 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02113 Bda-Chr1:57180782 Bda06g00931 Bda-Chr6:25133007 4.67E-52 dispersed
Bda06g00808 Bda-Chr6:11320119 Bda01g02113 Bda-Chr1:57180782 1.84E-30 dispersed
Bda01g01585 Bda-Chr1:51700642 Bda01g02113 Bda-Chr1:57180782 3.91E-52 transposed
Bda01g02113 Bda-Chr1:57180782 Bda11g01162 Bda-Chr11:11889411 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15508 PF00010 HLH 6.70E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02113 - - zju:107429134 565.074