Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02119 ATGGGGAGGGGTAGGGTTCAGCTGAAACGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGGTGGGTTACTGAAGAAAGCTCATGAAATTTCTGTACTTTGTGATGCTGAGGTTGCTTTGATCGTCTTCTCCAACAAAGGAAAGCTCTTTGAATACGCTACTGATTCTAGTATGGAGATGATACTCGAGCGTTATGAGAGATATTCCTGTGCAGAAAGGCAGCTTACTGCAACTCAATCTGAGTCACAGGGTAACTGGATCGTTGAGTATTCAAGGCTAAAAGCTAAGATTGAGCTCTTAGAGAGAAAATGCAGCCACTATGTGGGAGAAGATTTGAATTCATTGAATCTCAAAGAACTTCAAAGTCTGGAGCAACAGCTTGAAACTGCTCTTAAACATATTCGCACTAGAAAAGTATGGTTTATATGA 444 39.41 MGRGRVQLKRIENKINRQVTFSKRKGGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLTATQSESQGNWIVEYSRLKAKIELLERKCSHYVGEDLNSLNLKELQSLEQQLETALKHIRTRKVWFI 147
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 57227731 57230188 - Bda004450.1 Bda01g02119 2119
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02119 147 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bda01g02119 147 Coils Coil 122 142 - -
Bda01g02119 147 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bda01g02119 147 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bda01g02119 147 ProSiteProfiles K-box domain profile. 88 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g02119 147 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 143 - -
Bda01g02119 147 Pfam K-box region 83 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g02119 147 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g02119 147 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02119 Bda-Chr1:57227731 Bda11g01170 Bda-Chr11:12050423 5.40E-96 dispersed
Bda04g00032 Bda-Chr4:528368 Bda01g02119 Bda-Chr1:57227731 7.38E-36 dispersed
Bda01g02119 Bda-Chr1:57227731 Bda10g01107 Bda-Chr10:45092866 7.56E-75 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15509 PF01486 K-box 4.70E-19 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02119 K09264 - qsu:112022353 223.402