Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g02119 | ATGGGGAGGGGTAGGGTTCAGCTGAAACGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGGTGGGTTACTGAAGAAAGCTCATGAAATTTCTGTACTTTGTGATGCTGAGGTTGCTTTGATCGTCTTCTCCAACAAAGGAAAGCTCTTTGAATACGCTACTGATTCTAGTATGGAGATGATACTCGAGCGTTATGAGAGATATTCCTGTGCAGAAAGGCAGCTTACTGCAACTCAATCTGAGTCACAGGGTAACTGGATCGTTGAGTATTCAAGGCTAAAAGCTAAGATTGAGCTCTTAGAGAGAAAATGCAGCCACTATGTGGGAGAAGATTTGAATTCATTGAATCTCAAAGAACTTCAAAGTCTGGAGCAACAGCTTGAAACTGCTCTTAAACATATTCGCACTAGAAAAGTATGGTTTATATGA | 444 | 39.41 | MGRGRVQLKRIENKINRQVTFSKRKGGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLTATQSESQGNWIVEYSRLKAKIELLERKCSHYVGEDLNSLNLKELQSLEQQLETALKHIRTRKVWFI | 147 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57227731 | 57230188 | - | Bda004450.1 | Bda01g02119 | 2119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g02119 | 147 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | CDD | MADS_MEF2_like | 2 | 74 | IPR033896 | GO:0000977|GO:0045944 | |
Bda01g02119 | 147 | Coils | Coil | 122 | 142 | - | - | |
Bda01g02119 | 147 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | ProSiteProfiles | K-box domain profile. | 88 | 147 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda01g02119 | 147 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 143 | - | - | |
Bda01g02119 | 147 | Pfam | K-box region | 83 | 143 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda01g02119 | 147 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g02119 | 147 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g02119 | Bda-Chr1:57227731 | Bda11g01170 | Bda-Chr11:12050423 | 5.40E-96 | dispersed | |
Bda04g00032 | Bda-Chr4:528368 | Bda01g02119 | Bda-Chr1:57227731 | 7.38E-36 | dispersed | |
Bda01g02119 | Bda-Chr1:57227731 | Bda10g01107 | Bda-Chr10:45092866 | 7.56E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15509 | PF01486 | K-box | 4.70E-19 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g02119 | K09264 | - | qsu:112022353 | 223.402 |