Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02126 ATGGCATCGGAAAAGGGGGATCCATCACCCCCACCAGAGATGGTGGGCAATGCCTTTGTGCAGCAGTATTATTGTACTCTTCATCAATCCCCTGAGCTGGTTTACAAATTTTATCAGGATTCCAGTGTTATCAGCCGACCTGGTCCGGATGGAGAGATGACAACGGTGACAACAATGCAAAATATTAATGAAAAGATCGTCTCTCTGGACTACAAGAACTGTAAGATTGAAATATTGACAGCTGATACTCAGCGTTCATTTAATGGTGGCGTGTTTGTCATGGTGACTGGCTGTTTAACAGAGAAAGATAACCAGAAAAGGAAGTTCTCTCAAATGTTTTTTCTAGCTCCCCAACAATCTGGTTTTTTCGTTTTAAATGATATCTTTAGGTATGCAAATGAATGTGCTGATGGGAATCTTGACTCTGATAAAGTTGTTGAAAGTGCTACAGAATCTCCAACGACCCCAGATCTTGGTAAGCATTGCAGAAACAGTTGCCCACTCTTTTCACAATCTGTATTAAAATGGCCTTCTAAAATTGGTAACAAATTTCCCTTTTTTCCTCTACCAGTTGAAACCAACGTTGACCTTAAATCTAATCTTTCTGAACAAGATGAAAACCCTCCATTGGTGGAAGGTGCTAACGGTGACCAGGCCATCTGTCATGTATTGGATAATGGAAAAGAATCAACTACTGAAAAGGTTCTTGTTAGTGATCCTCTGGTCGTGAGTAAGAATAATGATGTTCCTGCTGTCACTGAGACAGTTGCAACTAATGTTTTGAAGGACACACCTAAAAAATCTTTTGCATCTGTGGTAAATGAACTGAAGGATAAATCTGCCCCATTCCATTCGAGGGTTTCACCTGTTAAGCCTGCAGGAAAGCCACAGATTCCTCAACCGCCTGAAGTTTCAACTCAGAAATATGAGACTGTTGTCGAGAAGAGCGATGCCTCAGCAGTCAAGGCTTATGCAATCTTTGTTCCAAATTTGCCCATGAATGCTACTGACGAAGAGCTTGAAAAGACGTTTTTGGAATTTGGTCCCATTAGATCTAATAGCATACAAATTAGGAGTAATAAGGGATCTTGTTTTGGTTTTGTGGAGTTCGAATCAGCAACATCAATGCAAAATGCACTTAAGCTGATTATTTTTGGTTTATGCTTAGCAGCAAACAATGATAGAGGGAGATTCCCATCGGGACATGGTAGTTATAGAAACGAAAACTATAGACCTCGGGGGAATTTCGGTGAAGGGCGTGGCATTGCAAAGCACGATTCCGGGCAGCGTCCAGACCGAGAGTTTTCAGGTCGACCGCGAGGAAATTTTGAACAAAATGGAGAAGCTAATACTTTGAGGTTTCATCGCAATTGGGAAGGAGGAAGGGTAGGCGAAGGTGGCCAGAGGTTCCACCAAAATGGTGAAGGTAGAGTGCATCTAAACCGCCAAGAGGTTGGTCAGCAAGAGAAGTACCGCAAGTAG 1482 42.24 MASEKGDPSPPPEMVGNAFVQQYYCTLHQSPELVYKFYQDSSVISRPGPDGEMTTVTTMQNINEKIVSLDYKNCKIEILTADTQRSFNGGVFVMVTGCLTEKDNQKRKFSQMFFLAPQQSGFFVLNDIFRYANECADGNLDSDKVVESATESPTTPDLGKHCRNSCPLFSQSVLKWPSKIGNKFPFFPLPVETNVDLKSNLSEQDENPPLVEGANGDQAICHVLDNGKESTTEKVLVSDPLVVSKNNDVPAVTETVATNVLKDTPKKSFASVVNELKDKSAPFHSRVSPVKPAGKPQIPQPPEVSTQKYETVVEKSDASAVKAYAIFVPNLPMNATDEELEKTFLEFGPIRSNSIQIRSNKGSCFGFVEFESATSMQNALKLIIFGLCLAANNDRGRFPSGHGSYRNENYRPRGNFGEGRGIAKHDSGQRPDREFSGRPRGNFEQNGEANTLRFHRNWEGGRVGEGGQRFHQNGEGRVHLNRQEVGQQEKYRK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57270631 57274129 + Bda004457.1 Bda01g02126 2126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02126 493 MobiDBLite consensus disorder prediction 418 439 - -
Bda01g02126 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 381 IPR000504 GO:0003723
Bda01g02126 493 MobiDBLite consensus disorder prediction 283 305 - -
Bda01g02126 493 PANTHER BNAA02G14660D PROTEIN 1 442 - -
Bda01g02126 493 Gene3D - 274 384 IPR012677 -
Bda01g02126 493 SMART rrm1_1 325 392 IPR000504 GO:0003723
Bda01g02126 493 SUPERFAMILY RNA-binding domain, RBD 323 421 IPR035979 GO:0003676
Bda01g02126 493 SUPERFAMILY NTF2-like 12 131 IPR032710 -
Bda01g02126 493 CDD NTF2 11 133 IPR018222 -
Bda01g02126 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 397 IPR000504 GO:0003723
Bda01g02126 493 CDD RRM_SF 326 381 - -
Bda01g02126 493 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bda01g02126 493 Gene3D - 6 135 - -
Bda01g02126 493 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bda01g02126 493 MobiDBLite consensus disorder prediction 475 493 - -
Bda01g02126 493 MobiDBLite consensus disorder prediction 397 493 - -
Bda01g02126 493 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 442 IPR039539 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02126 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - gmx:100805610 353.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02126 Bda-Chr1:57270631 Bda06g00520 Bda-Chr6:7472915 1.09E-79 dispersed
Bda01g02126 Bda-Chr1:57270631 Bda15g00626 Bda-Chr15:9400480 4.69E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g31 . Blo16g01084 Bda01g02126 . Bpe13g01372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0524 . . . . . . . . . . . . Bma06g00740 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018106 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5