Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02126 ATGGCATCGGAAAAGGGGGATCCATCACCCCCACCAGAGATGGTGGGCAATGCCTTTGTGCAGCAGTATTATTGTACTCTTCATCAATCCCCTGAGCTGGTTTACAAATTTTATCAGGATTCCAGTGTTATCAGCCGACCTGGTCCGGATGGAGAGATGACAACGGTGACAACAATGCAAAATATTAATGAAAAGATCGTCTCTCTGGACTACAAGAACTGTAAGATTGAAATATTGACAGCTGATACTCAGCGTTCATTTAATGGTGGCGTGTTTGTCATGGTGACTGGCTGTTTAACAGAGAAAGATAACCAGAAAAGGAAGTTCTCTCAAATGTTTTTTCTAGCTCCCCAACAATCTGGTTTTTTCGTTTTAAATGATATCTTTAGGTATGCAAATGAATGTGCTGATGGGAATCTTGACTCTGATAAAGTTGTTGAAAGTGCTACAGAATCTCCAACGACCCCAGATCTTGGTAAGCATTGCAGAAACAGTTGCCCACTCTTTTCACAATCTGTATTAAAATGGCCTTCTAAAATTGGTAACAAATTTCCCTTTTTTCCTCTACCAGTTGAAACCAACGTTGACCTTAAATCTAATCTTTCTGAACAAGATGAAAACCCTCCATTGGTGGAAGGTGCTAACGGTGACCAGGCCATCTGTCATGTATTGGATAATGGAAAAGAATCAACTACTGAAAAGGTTCTTGTTAGTGATCCTCTGGTCGTGAGTAAGAATAATGATGTTCCTGCTGTCACTGAGACAGTTGCAACTAATGTTTTGAAGGACACACCTAAAAAATCTTTTGCATCTGTGGTAAATGAACTGAAGGATAAATCTGCCCCATTCCATTCGAGGGTTTCACCTGTTAAGCCTGCAGGAAAGCCACAGATTCCTCAACCGCCTGAAGTTTCAACTCAGAAATATGAGACTGTTGTCGAGAAGAGCGATGCCTCAGCAGTCAAGGCTTATGCAATCTTTGTTCCAAATTTGCCCATGAATGCTACTGACGAAGAGCTTGAAAAGACGTTTTTGGAATTTGGTCCCATTAGATCTAATAGCATACAAATTAGGAGTAATAAGGGATCTTGTTTTGGTTTTGTGGAGTTCGAATCAGCAACATCAATGCAAAATGCACTTAAGCTGATTATTTTTGGTTTATGCTTAGCAGCAAACAATGATAGAGGGAGATTCCCATCGGGACATGGTAGTTATAGAAACGAAAACTATAGACCTCGGGGGAATTTCGGTGAAGGGCGTGGCATTGCAAAGCACGATTCCGGGCAGCGTCCAGACCGAGAGTTTTCAGGTCGACCGCGAGGAAATTTTGAACAAAATGGAGAAGCTAATACTTTGAGGTTTCATCGCAATTGGGAAGGAGGAAGGGTAGGCGAAGGTGGCCAGAGGTTCCACCAAAATGGTGAAGGTAGAGTGCATCTAAACCGCCAAGAGGTTGGTCAGCAAGAGAAGTACCGCAAGTAG 1482 42.24 MASEKGDPSPPPEMVGNAFVQQYYCTLHQSPELVYKFYQDSSVISRPGPDGEMTTVTTMQNINEKIVSLDYKNCKIEILTADTQRSFNGGVFVMVTGCLTEKDNQKRKFSQMFFLAPQQSGFFVLNDIFRYANECADGNLDSDKVVESATESPTTPDLGKHCRNSCPLFSQSVLKWPSKIGNKFPFFPLPVETNVDLKSNLSEQDENPPLVEGANGDQAICHVLDNGKESTTEKVLVSDPLVVSKNNDVPAVTETVATNVLKDTPKKSFASVVNELKDKSAPFHSRVSPVKPAGKPQIPQPPEVSTQKYETVVEKSDASAVKAYAIFVPNLPMNATDEELEKTFLEFGPIRSNSIQIRSNKGSCFGFVEFESATSMQNALKLIIFGLCLAANNDRGRFPSGHGSYRNENYRPRGNFGEGRGIAKHDSGQRPDREFSGRPRGNFEQNGEANTLRFHRNWEGGRVGEGGQRFHQNGEGRVHLNRQEVGQQEKYRK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57270631 57274129 + Bda004457.1 Bda01g02126 2126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02126 493 MobiDBLite consensus disorder prediction 418 439 - -
Bda01g02126 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 381 IPR000504 GO:0003723
Bda01g02126 493 MobiDBLite consensus disorder prediction 283 305 - -
Bda01g02126 493 PANTHER BNAA02G14660D PROTEIN 1 442 - -
Bda01g02126 493 Gene3D - 274 384 IPR012677 -
Bda01g02126 493 SMART rrm1_1 325 392 IPR000504 GO:0003723
Bda01g02126 493 SUPERFAMILY RNA-binding domain, RBD 323 421 IPR035979 GO:0003676
Bda01g02126 493 SUPERFAMILY NTF2-like 12 131 IPR032710 -
Bda01g02126 493 CDD NTF2 11 133 IPR018222 -
Bda01g02126 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 397 IPR000504 GO:0003723
Bda01g02126 493 CDD RRM_SF 326 381 - -
Bda01g02126 493 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bda01g02126 493 Gene3D - 6 135 - -
Bda01g02126 493 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bda01g02126 493 MobiDBLite consensus disorder prediction 475 493 - -
Bda01g02126 493 MobiDBLite consensus disorder prediction 397 493 - -
Bda01g02126 493 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 442 IPR039539 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02126 Bda-Chr1:57270631 Bda06g00520 Bda-Chr6:7472915 1.09E-79 dispersed
Bda01g02126 Bda-Chr1:57270631 Bda15g00626 Bda-Chr15:9400480 4.69E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02126 K24983 - gmx:100805610 353.984