Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02129 ACGACTTCCAAAATGGCTTTGCTTTCTCGAAACCGAAACCTATTGAGATCCTTGAACTTCAACAATGCTTCCCGCATGAAGACCATCACATCCTTCGCGTTTCTCTCGCAGGAAGCTCAGCTCGCTACTGAACCTCCGCACACATCGTCTACTCCGCTTCCTCCTAGTCCTTCATCCGGCAGTCCTCTCTACAACGAGAATTGGCGGAGCCCTATTCCTCACTCCTCGATGACGCAGTCTATTATTCCGCTTGGATTCCTTAACCAGTCTCCGAACTCTCGAATGAAAGCATTGTCGGAGACGCTGGATCTTCAAAGCTTGTTAAATGTCTTCGCTGATAGGGTGGCCTCGCAACGATGGGCTGAAATGAAGCAACTTTTTGAACTTTGGATTCGGTCTTTAGACAAAAATGGAAAACCAAATATACCGGATGTGAACTTGTATAACAATTATTTGATGGCTAATTTGATGATTGGAGCGTCGGCGGGGGAGCTTCTGGATCTGGTATCTCAAATGGAGGACTATGCTATCTCTCCGAATACAGCGTCTTATAATTTGGTTTTGAAGGCCATGTACCAATCTAAGGAGACTGATGCGGCTCAGAAATTGATTGAACGAATGCTGCAGACAGGAGAAGCCTCTATGCCTGATGATGAATCATATGATTTGATGATTGGAATGCTATTTTCATCAGACGAGATTGATACTGCATTGAAATACATAGACTTGACTTTAAAATCAGGTTCCATGCTGTCATTAAAGGTGTTTACTGAATGTGTGCGGAGCTGTGTAAACAAGGGCAGGCTAGATATGCTGGTTTCCATAATTGATAGGTGCAAGACAACTGTTCAGAATAAAGCTCTGTGTCCAAATTGGAATCTGTGCAATTATATTGCTGAAATTGCAATGCAAGAAGATAACAGTAAGTTATCATTTCACGCCCTGGAGTTTATGGCCAGATGGATAGCTCGTGGTGAGAATGCAAGGCCCCCTGTTTATCTTTCTGTAGATGAAGGATTGGTTGTTTCAGCACTTGGAACTGCTTGTAGAACCTACAGTTCTACTCTTGTGGATGCATCATGGGCAATTCTAAAGCGTTCATTGCGTCAAAAGAAGGCTCCTAATCCAGAATCTTATCTTGGGAAAATACATGCCCTTGCATCGATTGGTAATCTGCAAAGGGCTTTCAGTACTCTCCATGAATTTGAAACAGCCTACGCAAATTCTGATGTAGATAATCAAGAAGATGTGTTCTCTCCATTCACATGTTTGTACCCGTTGGTTTTAGCCTGCTCCAAAAAGGGTTTTGAAACTTTGGACTCCGTCTATTTCCAACTTGAGAACTTGAGCCGGGCAGATCCACCATACAAGTCTGTTGCGGCTTTAAATTGCATCATTTTGGGCTGTGCAAATATATGGGACATTGATCGTGCTTACCAAACTTTTGAGGCCATTGGGTCCACTTTTGGATTGACTCCGAACATTCATTCATATAACGCTCTGATGTATGCATTTGGAAAGCTCAAGAAGACGTTTGAAGCTTCTAGGGTTTTTGAACATGCATTGAGTTTGGGGGTTAAACCAAATGCAACTTCTTATTCATTACTGGTGGATGCTCATCTCGTTAACAGAGACCAGAAGTCTGCTCTCTCTGTGATTGATGATTTGATTTCTGCTGGTTTTGAGCCATCAAAAGAAACGTTGAAGAAGGTGAGAAGACGATGCATTCGAGAAATGGACTACGATAGTGATGATCGGATTGATTCCATGGCTAAAAAGTTGAAGTTTCGAATGGGTTCAGAGAATCGCAGGGATATGCTGTTCAATCTTGAGTACAGCACCAATTATGTCTCATAG 1857 42.65 TTSKMALLSRNRNLLRSLNFNNASRMKTITSFAFLSQEAQLATEPPHTSSTPLPPSPSSGSPLYNENWRSPIPHSSMTQSIIPLGFLNQSPNSRMKALSETLDLQSLLNVFADRVASQRWAEMKQLFELWIRSLDKNGKPNIPDVNLYNNYLMANLMIGASAGELLDLVSQMEDYAISPNTASYNLVLKAMYQSKETDAAQKLIERMLQTGEASMPDDESYDLMIGMLFSSDEIDTALKYIDLTLKSGSMLSLKVFTECVRSCVNKGRLDMLVSIIDRCKTTVQNKALCPNWNLCNYIAEIAMQEDNSKLSFHALEFMARWIARGENARPPVYLSVDEGLVVSALGTACRTYSSTLVDASWAILKRSLRQKKAPNPESYLGKIHALASIGNLQRAFSTLHEFETAYANSDVDNQEDVFSPFTCLYPLVLACSKKGFETLDSVYFQLENLSRADPPYKSVAALNCIILGCANIWDIDRAYQTFEAIGSTFGLTPNIHSYNALMYAFGKLKKTFEASRVFEHALSLGVKPNATSYSLLVDAHLVNRDQKSALSVIDDLISAGFEPSKETLKKVRRRCIREMDYDSDDRIDSMAKKLKFRMGSENRRDMLFNLEYSTNYVS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57290732 57294190 + Bda004460.1 Bda01g02129 2129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02129 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Bda01g02129 618 TIGRFAM PPR: pentatricopeptide repeat domain 496 530 IPR002885 -
Bda01g02129 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Bda01g02129 618 Gene3D Tetratricopeptide repeat domain 114 324 IPR011990 GO:0005515
Bda01g02129 618 Gene3D Tetratricopeptide repeat domain 334 603 IPR011990 GO:0005515
Bda01g02129 618 Pfam PPR repeat 183 209 IPR002885 -
Bda01g02129 618 Pfam PPR repeat 497 525 IPR002885 -
Bda01g02129 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Bda01g02129 618 PANTHER OS07G0599000 PROTEIN 3 616 IPR044605 -
Bda01g02129 618 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02129 Bda-Chr1:57290732 Bda15g00029 Bda-Chr15:1691691 4.51E-12 dispersed
Bda01g02129 Bda-Chr1:57290732 Bda10g00563 Bda-Chr10:39624188 8.80E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02129 - - vvi:100249185 922.539