Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02130 ATGAGAAGCCCTTGGCTCAATAAGCTTTCCTTCATATTTGGGCATAGACTGCCACTCAATTGCTTGCTCTTGTGCATCCTTAGCGTGTTTGCAGTCATAGCAATCTTCGGATCCCGCTCAAATGTCTTCGACTTTGCTACTCCTACTCCGGTATCTGTGATTTATGGCAACTACAGAAGGTTGAAGGAGAAAGCTGCTGTTGATTATTTGGATCTGAAGTTTATTTCATCAATTTCTTCTAGTCAAAGGGAGCTTAGCCTTTGTGGCAAAGAAAGAGAAAACTACGTGCCTTGTTACAATGTTTCGGCAAATTCGTTTGCTGGATTTAAAGACGGGGAAGAGTTTGATAGACACTGCAAAGTTTTGAGACAAGAAAAGCACTGTCTAGTTCGTCCTCCGAAAGATTATAAGATCCCCCTCAGATGGCCAGCTGGTAGGGATGTGATATGGAGTGGGAATGTGAAGATAAGCAAAGATCAATTTCTTTCATCAGGAAGCATGACCAAAAGGTTGATGCTGTTAGAAGAGAACCAAATTTCTTTTCACTCTGAGGATGGATTGGTTTTTGATGGCGTCAAAGATTACTCTCGGCAGGTTGCCGAAATGATAGGACTGGGCAGTGACTCTGAATTCCCTCAAGCTGGTGTGCGGACAGTTTTGGATATAGATTGTGGGTTTGGTAGCTTTGGAGCTCATTTATTATCACTGAGTGTGATGGCTATTTGTATTGCCAAATACGAAGCAACTGGTAGCCAAGTTCAGTTGGCCCTTGAGAGAGGTCTTCCGGCATTGATTGGCAGCTTCGTTTCGAGGCAACTTCCATATCCATCGTTGTCTTTCGACATGGTTCACTGCGCACAATGTGGTATTGGTTGGGACGATAAAGGTGGGATGTTCCTTATCGAAGTCGATCGGATACTTAAACCCGGGGGATACTTTGTTTTAACGTCACCGACTAGCAAGCCACAAGGAAGTTTGTCGAATGTGAAGACAAGCATGATCACAGTAGTGGAGGAGTTGGCTAAGGGAGTCTGTTGGAGACTTCAAGGTCAGCAGGATGAAACATTTATATGGCAGAAAGTAGCCGATACTCATTGCTATGCTTCTCGCAAACATGGGGCTGTACCTCTTTGTAAAGAAGACCATGACGTCCAAAATTACTATCAGCCTCTAGCACCATGTATAAGTGGAACCACCAGCAAAAGGTGGATTCCAGTACAGAACAGGTCCTCTTACTCCCATTTGACTGCAGCTGATCTTGAAACTTGTATTCAGCCTGAAGACTTCTTCGAAGACGCACAATTTTGGCGATCTTCCTTGAAAGATTACTGGTCCTTGCTTACACCACTAATTTTCTCCGACCATCCAAAGAGGCTTGGGGATGAAGATCCACTGCCGCCATACAATATGATACATAATGTGATGGACATGAATGCAAACTATGGAGGATTAAATGCTGCATTTGTCGAGGAGAAGAAATCGGCATGGGTGATGAATGTTGTCCCTTTCGGATCTCCTAATACACTCTCTGTCATACTCGATCAAGGTTTAGCCGGCGTACTCCATGATTGGTGCGAACCTTTTCCGACTTACCCACGGACGTATGACATGGTTCATGCGAATGAGCTTTTCTCACATTTCACTTCAGAAAGGTGTAGTATGATGGACTTGATCGTGGAGATAGATCGAATACTACGACCCGAGGGATGGGTTATTCTCAGTGATAAAGTAGAAGTCATCGAGATGGCACGAATGCTCGCAATGAAAATGCGATGGGAGGCCCGGGTGATTGATCCTCAGAACGGCAGTGACCAGAGGCTTCTCATTTGCCAAAAACCTTTCCTCAAAAAATGA 1854 44.39 MRSPWLNKLSFIFGHRLPLNCLLLCILSVFAVIAIFGSRSNVFDFATPTPVSVIYGNYRRLKEKAAVDYLDLKFISSISSSQRELSLCGKERENYVPCYNVSANSFAGFKDGEEFDRHCKVLRQEKHCLVRPPKDYKIPLRWPAGRDVIWSGNVKISKDQFLSSGSMTKRLMLLEENQISFHSEDGLVFDGVKDYSRQVAEMIGLGSDSEFPQAGVRTVLDIDCGFGSFGAHLLSLSVMAICIAKYEATGSQVQLALERGLPALIGSFVSRQLPYPSLSFDMVHCAQCGIGWDDKGGMFLIEVDRILKPGGYFVLTSPTSKPQGSLSNVKTSMITVVEELAKGVCWRLQGQQDETFIWQKVADTHCYASRKHGAVPLCKEDHDVQNYYQPLAPCISGTTSKRWIPVQNRSSYSHLTAADLETCIQPEDFFEDAQFWRSSLKDYWSLLTPLIFSDHPKRLGDEDPLPPYNMIHNVMDMNANYGGLNAAFVEEKKSAWVMNVVPFGSPNTLSVILDQGLAGVLHDWCEPFPTYPRTYDMVHANELFSHFTSERCSMMDLIVEIDRILRPEGWVILSDKVEVIEMARMLAMKMRWEARVIDPQNGSDQRLLICQKPFLKK 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57297671 57301150 - Bda004461.1 Bda01g02130 2130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02130 617 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 336 IPR029063 -
Bda01g02130 617 Gene3D Vaccinia Virus protein VP39 187 362 IPR029063 -
Bda01g02130 617 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 469 591 IPR029063 -
Bda01g02130 617 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 94 612 IPR004159 GO:0008168
Bda01g02130 617 CDD AdoMet_MTases 218 316 - -
Bda01g02130 617 Gene3D Vaccinia Virus protein VP39 512 600 IPR029063 -
Bda01g02130 617 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 616 IPR004159 GO:0008168
Bda01g02130 617 PANTHER METHYLTRANSFERASE PMT4-RELATED 1 616 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02130 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - jre:109014361 967.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00888 Bda-Chr1:41866787 Bda01g02130 Bda-Chr1:57297671 0 dispersed
Bda01g02130 Bda-Chr1:57297671 Bda03g00489 Bda-Chr3:4188966 0 dispersed
Bda01g02130 Bda-Chr1:57297671 Bda11g01181 Bda-Chr11:12193721 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g66 . . Bda01g02130 . . . Bma14g01641 . . Cmo18g01134 . Cma18g01112 . Car18g01026 Sed06g1770 . . Bhi07g01503 Tan04g1016 Cmetu03g1484 . . . . . . . . . . . . . . . . Csa05g02505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004930 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41