Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02133 ATGGACACTTTGCTTAGGCAGATGAGAGCGAAACCTCCAAAAATAGGACTGGACAACACGGAAGAGACTGGTGAAACCAAGGAGGGAAGATTACAACCTCAGAAAACCTTGTCTGGTCAAGAGAAGAAGACATCGCAAAGCTGGTTACGACGACCATTTTCTACGCAAATGGGCCGGCGCGACTCTGAGTCTAGCCATGAAGTGTACACAACTGCAGTTGCAGCAGCTGTGTATGCCATACGTTCCCAGGAAGAATCAGAAATTACCGACAAGAAGAAGACGACGGCGACTTCCGAGACGTTGTTGACAAAGCAGAAGACGAAGAAGATCAATATAACAGATCAAGAAGAAGGAAAAGTTTCAAGACGATTCTCAGATATAATTAAAAATCAGGAAGGCGAGAAGAAAAAGACAGTTGCACCTCGTGGAAAGTCGCCGGAGAAGGCTGTCCAACCAAACCCGTCCATCAAGAGAGCGTCGACTTTTCCCGATAAGAGTTCGGACAGCGCTGCCGGCAAAAACCCTGAAAGCCCGGCGCCGAAACTTAACTCTAACGTTGCAGTTAAACCCTCAACTGGACCGGCAGATGCAGAAGCTTGGGAAAGAGCTGAAATGGCGAAGATCAATAACAGGTACGAGAATCTAAACTCTACCATCCTCTCCTGGGAGAAGGAGAAGAAAGCTAAGGCTAGACGCCGCCATGACAGGACGGAGAGTGAACTATCGAGGCAAAGAGAAGAATCGTTGCTAAAATTTAACCGCGAGGTGGAATATATCAGCCATATAGCGAGTGGAGCAAGAGCCAAGGCTGCTAGTAAAAGAATAAATGAAGAGGTGACAGTGAAAGAAAAGTCAAATTTAATCAGAAGAACAGGAGAAGTCCCTCAAACATGTTTCTGCTTCTGA 906 46.47 MDTLLRQMRAKPPKIGLDNTEETGETKEGRLQPQKTLSGQEKKTSQSWLRRPFSTQMGRRDSESSHEVYTTAVAAAVYAIRSQEESEITDKKKTTATSETLLTKQKTKKINITDQEEGKVSRRFSDIIKNQEGEKKKTVAPRGKSPEKAVQPNPSIKRASTFPDKSSDSAAGKNPESPAPKLNSNVAVKPSTGPADAEAWERAEMAKINNRYENLNSTILSWEKEKKAKARRRHDRTESELSRQREESLLKFNREVEYISHIASGARAKAASKRINEEVTVKEKSNLIRRTGEVPQTCFCF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57322336 57323723 + Bda004464.1 Bda01g02133 2133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02133 301 MobiDBLite consensus disorder prediction 1 67 - -
Bda01g02133 301 Pfam Remorin, C-terminal region 195 296 IPR005516 -
Bda01g02133 301 MobiDBLite consensus disorder prediction 109 143 - -
Bda01g02133 301 MobiDBLite consensus disorder prediction 15 29 - -
Bda01g02133 301 MobiDBLite consensus disorder prediction 83 198 - -
Bda01g02133 301 MobiDBLite consensus disorder prediction 30 53 - -
Bda01g02133 301 MobiDBLite consensus disorder prediction 154 190 - -
Bda01g02133 301 Coils Coil 205 225 - -
Bda01g02133 301 Coils Coil 227 247 - -
Bda01g02133 301 PANTHER OS02G0116800 PROTEIN 3 300 - -
Bda01g02133 301 PANTHER REMORIN FAMILY PROTEIN 3 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02133 - - - qlo:115978873 212.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02133 Bda-Chr1:57322336 Bda03g01615 Bda-Chr3:55431443 2.51E-07 dispersed
Bda01g02133 Bda-Chr1:57322336 Bda07g01443 Bda-Chr7:26801945 8.63E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g71 . . Bda01g02133 . . . . . . . . . . Car18g01030 . Cpe09g00209 . . . . . . . . . . . . . . . . Cone19ag0916 . Cone9ag0555 . . . . . . . . . Bpe02g02322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009173 1 2 0 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 2 1 34