Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02135 ATGTATAGGACTGTTGGTGCGGCGGCAGCTTCTACCACAACCGCGACGGTGAGCAAAGGAGGATCACCGTCGGATAGTGTGGATTATGTGGTTACTTTGGATCAGGTTCCGCGGTGGAGCGATGCAGAATTTAGATCTTCACTTGAACTTGAAGGCGAAGACGCTTCTTTCTCTAATTCTTACTTCCCTGATCCTTTGACCTCTTTGTCTGGGCCAGAGAGCGGTGTAAATGGAATGGTTTCGAGATTTCCGGTCGATCACGAAATTAATTCCAAGATATATCTTTGGAGAGGGAATCCATGGAATCTCGAGGTAGATGCTGTGGTCAATTCTACAAATGAGAGTTTGGATGAGGCAAACAGCAGCACAGGATTGCACTCTGCAGCTGGATCTGGTCTTGCCGAAGAATGTGCTTCCATGGGTGGTTGTCGGACGGGGATGGCAAAAGTAACTAATGCATATGACCTTCCGGCTAGGAAGGTCATACATACTGTCGGTCCAAAGTATGCAGTAAAATATCATACTGCAGCAGAGAATGCTTTAAGTCATTGTTATCGATCTTGCCTTGAACTTCTTATTGAAAATAGACTTCAAAGCATTGCAACAAGCTGTATATACAACGAGAATAAAAACTATCCTCGTGAACCTGCTGCGCATGTGGCTATAAGGACTGTGAGGCGGTTTCTCGAGAAGCAAAAAGATAAAATTAAAGCAGTTGTATTTTGTACTGCCACATCATCAGACACTGAGATATACAAGAGGTTGCTTCCCCTTTACTTTCCACGTGATAAACATGAAGAGGAAATTGCTATATCAAAGCTTCCTGCAGATGTAGGAGATGAGAATGGTGAGACTATAATAGATGAACGAAAGATCAGGATAAAGCCTTTGCCGAAAAAGAATATTCCAAAACCTCCTCAAGCTCCTGATGATCCTCCTATTAGTAGTGTTGGCTTGGCACGAAGGAGTTCTTCCTATTTGGATTCATATTTGGATCCTGCTTTTATGTCCTTGATCAAAGACCCCGATCAGAGACGCAGAGAGCAATGGGAAAAAACTGCTCAGGCGCAGAGTGGATGGAATTGTGCTAAAATGCTTGGATTTGGAGATCTTGGTGGACCTCCGCTATCTGCCGCCGAAGAATACTCACTTCATTCAAGATATCTTGCTAAAGCAAATTCTTTAAACTTGTCGGAAATTGCAGAAATGAAAATAATTTATCGTGGTGGGGTTGATAGTGAGGGTCATCCGGTAATGGTTGTTGTTGGAGCACATTTTCTCCTGCGATGCCTTGATCTGGATCGTTTTGTTCTTTATGTCATAAAGGAATTTGAGCCATTGATACAGAAGCCTTATACAATTGTCTACTTCCATTCGGCAGCATCTTTACAGCCCCGACCTGACATGGGATGGATGAGAAGACTACAACAAATACTTGGCCGCAAACACCAGCGTAATCTTCACGCCATCTATGTTCTTCATCCATCATTTGGACTAAAGACTACAATTTTTGCCATGCAACTGTTTGTAGACAATGTGGTATGGAACAAAGTGGTGTACGTCGATAGGCTTCTGCAGTTGTTTCGATACGTTCCTCGTGAACAGTTGACTATTCCAGATTTTGTCTTCCAGCATGACTTGGAAGTAAATGGAGGGAAGGGCGTTATAGTCGACCCTCGAACAAAATATGTCTATCGTCGACCATAA 1707 43.23 MYRTVGAAAASTTTATVSKGGSPSDSVDYVVTLDQVPRWSDAEFRSSLELEGEDASFSNSYFPDPLTSLSGPESGVNGMVSRFPVDHEINSKIYLWRGNPWNLEVDAVVNSTNESLDEANSSTGLHSAAGSGLAEECASMGGCRTGMAKVTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENRLQSIATSCIYNENKNYPREPAAHVAIRTVRRFLEKQKDKIKAVVFCTATSSDTEIYKRLLPLYFPRDKHEEEIAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPQAPDDPPISSVGLARRSSSYLDSYLDPAFMSLIKDPDQRRREQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIIYRGGVDSEGHPVMVVVGAHFLLRCLDLDRFVLYVIKEFEPLIQKPYTIVYFHSAASLQPRPDMGWMRRLQQILGRKHQRNLHAIYVLHPSFGLKTTIFAMQLFVDNVVWNKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGVIVDPRTKYVYRRP 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57327029 57332135 + Bda004466.1 Bda01g02135 2135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02135 568 MobiDBLite consensus disorder prediction 295 317 - -
Bda01g02135 568 Gene3D - 398 549 IPR036865 -
Bda01g02135 568 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 11 548 - -
Bda01g02135 568 CDD Macro_GDAP2-like 91 259 IPR035793 -
Bda01g02135 568 Pfam Macro domain 109 221 IPR002589 -
Bda01g02135 568 ProSiteProfiles Macro domain profile. 80 260 IPR002589 -
Bda01g02135 568 SUPERFAMILY CRAL/TRIO domain 397 536 IPR036865 -
Bda01g02135 568 SUPERFAMILY Macro domain-like 81 289 IPR043472 -
Bda01g02135 568 Pfam Divergent CRAL/TRIO domain 415 546 IPR001251 -
Bda01g02135 568 SMART YBR022w_8 92 221 IPR002589 -
Bda01g02135 568 SMART sec14_4 396 545 IPR001251 -
Bda01g02135 568 CDD SEC14 403 539 IPR001251 -
Bda01g02135 568 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 11 548 - -
Bda01g02135 568 Gene3D Leucine Aminopeptidase, subunit E, domain 1 22 265 IPR043472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02135 K24997 GDAP2; ganglioside-induced differentiation-associated protein 2 - mnt:21400244 983.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02135 Bda11g01188 CCT
Bda01g02135 Bda11g01188 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02135 Bda-Chr1:57327029 Bda11g01314 Bda-Chr11:14204465 6.22E-53 dispersed
Bda05g01027 Bda-Chr5:58730387 Bda01g02135 Bda-Chr1:57327029 2.25E-10 transposed
Bda01g02135 Bda-Chr1:57327029 Bda11g01188 Bda-Chr11:12237670 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46