Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02141 ATGGGTTTTCTCTTAGCTCAGCCTTCACCCCCGGCTTTCCTTGGCTCTCACATCTCATGCAATCGCTTCTCTTTCATCACAAAGAGACCACTTTTGCGAACCAAACGACGAGTGCCTTTCATTATCAGCTCTATGGACCCTTCGCTTCCGCCTTCAGTTAGAAACTTCTGGCAATGGCTTCGCGGCGAGGGCGTCGTCTCTGCGAAGACTCCGGTGAAGCCGGCTGTTGTCGCGGAAGGTCTGGGACTAGTAGCGCAGAGAGACCTAGCGCGAAACGAGGTTGTTCTGGAGGTCCCAAAAAGGCTTTGGATTAATCCCGACGCTGTGGCTTCTTCAGACATTGGAAATGTGTGTAGTGGATTGAAACCATGGGTGTCTGTTGCTTTATTTTTGACGCGAGAGAAGTTGAGGGATGACTCTCCTTGGCGAATTTATCTTGACGTTCTTCCTAAGGAGATTAATTCGACTGTATTCTGGTCAGAAGAGGAGCTTTCTGAGCTTCAAGGAACCCAACTTCTGAGCACGACATTGGGGGTGAAAGAATACGTGCAGAGCGAGTTTGTTAAAGTCGAAGAAGAGATTATTCTCCCTCACAAGCAGCTCTTCCCATTTCATATAACTTTGGAAGACTTCTTCTGGGCATTTGGTGTACTAAGATCAAGAGCATTTTCTCGACTTCGCGGTCAAAATCTTGTTGTGATCCCTTTTGCAGACTTGATCAATCATGGTACCCACATAACCTCTGAAGATCATGCACAAGAGGTTAAAGGACCAGCCGGCCTTTTCTCATGGGACACCCTATTTTCTCTAAGAACTCCAGTTTCTCTCAAAGCCGGTGAGCAGGTTTTGATTCAATATGATATGAAGAAGAGCAATGCTGAATTGGCTATGGACTATGGATTCGTAGAGACAAAAGAAAATCGAAACGCATTTACACTAACACTCGAGATATCAGAGTCTGACCCCTTTTTTGGTGACAAATTGGACATTGCCGAGTCAAATGGTTTGGGAGAGACTGCATACTTCGACATTGTTCTAGACCAACCATTTCCCCCAACAATGCTTCCGTTTTTGCGCCTTCTAGCTCTCGGAGGAACTGACGCATTCCTCTTGGAATCTCTTTTCAGAAACTCTGTTTGGGGTCATCTTGGATTGCCTGTGAGCCGTGAAAATGAAGAGCTCATTTGTCGAGTGATTCGAGATGCTTGCAAGGCTGCACTTTCTGGCTACCATACCACCATTGAAGAAGATGAGAAGCTTCAAGAGGAAAATCTGAGTCCAAGGCTAGAAATTGCTGTTGAAGTGAGGAAAGGAGAGAAGAAGGTGCTGAAGCAAATTGATGAAATCTTCAAGAAGAGGGAACTGGAACTGAATGAGTTAGAATACTACCATGAAAGAAGGCTCAAGGACCTTGGCCTTTGTGGAGAACAAGGTGAAATCATCTTCTGGGAGCAGAAATAA 1461 45.65 MGFLLAQPSPPAFLGSHISCNRFSFITKRPLLRTKRRVPFIISSMDPSLPPSVRNFWQWLRGEGVVSAKTPVKPAVVAEGLGLVAQRDLARNEVVLEVPKRLWINPDAVASSDIGNVCSGLKPWVSVALFLTREKLRDDSPWRIYLDVLPKEINSTVFWSEEELSELQGTQLLSTTLGVKEYVQSEFVKVEEEIILPHKQLFPFHITLEDFFWAFGVLRSRAFSRLRGQNLVVIPFADLINHGTHITSEDHAQEVKGPAGLFSWDTLFSLRTPVSLKAGEQVLIQYDMKKSNAELAMDYGFVETKENRNAFTLTLEISESDPFFGDKLDIAESNGLGETAYFDIVLDQPFPPTMLPFLRLLALGGTDAFLLESLFRNSVWGHLGLPVSRENEELICRVIRDACKAALSGYHTTIEEDEKLQEENLSPRLEIAVEVRKGEKKVLKQIDEIFKKRELELNELEYYHERRLKDLGLCGEQGEIIFWEQK 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57362405 57365496 - Bda004472.2 Bda01g02141 2141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02141 486 Pfam Rubisco LSMT substrate-binding 319 443 IPR015353 -
Bda01g02141 486 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 311 483 IPR036464 -
Bda01g02141 486 CDD SET_RBCMT 64 302 IPR044431 GO:0016279|GO:0018022
Bda01g02141 486 Pfam SET domain 80 286 IPR001214 GO:0005515
Bda01g02141 486 Gene3D - 303 467 IPR036464 -
Bda01g02141 486 ProSiteProfiles SET domain profile. 63 287 IPR001214 GO:0005515
Bda01g02141 486 PIRSF RMT_SET 3 486 IPR011192 GO:0009507|GO:0030785
Bda01g02141 486 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 2 486 IPR011192 GO:0009507|GO:0030785
Bda01g02141 486 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 33 480 - -
Bda01g02141 486 Gene3D set domain protein methyltransferase, domain 1 50 302 - -
Bda01g02141 486 SUPERFAMILY SET domain 50 308 IPR046341 -
Bda01g02141 486 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 33 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02141 K00592 RBCMT; [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase [EC:2.1.1.127 2.1.1.259] - qsu:112002850 710.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02141 Bda-Chr1:57362405 Bda07g00812 Bda-Chr7:9605730 1.48E-14 dispersed
Bda01g02141 Bda-Chr1:57362405 Bda15g00373 Bda-Chr15:6610031 4.55E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g961 Blo01g00438 . Bda01g02141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00109 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007838 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15511 PF00856 SET 2.40E-06 No_clan Bda TR