Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02153 ATGCAGGGAGAAAAGCAGCTTCCTCTTTCATACCAACCAGGCAAGGGCACCACCTTTCTCCGAACTTGCCTCAACGGCATCAACGCCTTGTCAGGTGTGGGAATATTGTCGATTCCCTATGCCCTAGCTCAGGGAGGATGGCTGAGCCTAATCCTTCTCTTCTTAGTGGCGACTCTCTGCTGGTACACAGGATTGCTTCTAAAGAGATGCATGGATTCAAACCCATCGATCAAAACCTACCCAGACATAGGAGAGAAAGCATTCGGGTACAGAGGAAGAGCTGTAGTCTCCATCGTCATGTACCTAGAGCTTTATCTGGTTGCAGTCGAATTTCTCATCTTAGAAGGAGACAATCTAGAAAAACTGTTTCCAAAAATGGGTTTCAAAATAGGAAACCTCGAAGTAGAATCCAAACAGGCCTTGGTTCTTCTGTCAGCTCTGGTAATACTCCCCACCACGTGGTTCAAAAATCTAGGTGTTCTTGCTTACGTCTCTTCCGGTGGGGTTTTGGCTTCTGTTGCTTTGGTTTTCTTCGTTTTCTGGGCCGGCGCTTTTGATGGCGTTGGATTTCATCATCAATTAGATTCCGATGAGAATCTTCTGCGCTTTAGAGGACTTCCGACGACTATAAGCTTGTTTACCTTTTCTTATTGTGGACATGCAGTTTTTCCCATGCTATGTGATTCCATCAGAGACAGAAGTCAGTTTTCCAGGGTCTTGATTGTTTGCTTCATTGCAAGCACAATAAACTATGGATCAATGGCTGTTCTGGGCTACCTCATGTATGGAAACTACTCGAAATCTCAAATTACATTAAATCTTCCCATCAACAAATTAAGTACAAAACTAGCAATTTACACTACACTAGTCAATCCTTTTACTAAGTATGCAGTCATGATAAGTCCAATCTCTGCCGCGCTCGAAGAAAACATTCCTCTCAGTCGTATCAGACCCGTCAACATTTTAATCCGAAGCCTCCTCGTGATTAGCACGGTCTTTGTGGCTCTAGCAGTCCCATTTTTTGGCTACATTATGGCATTTATTGGAGCGTCTCTAAGTGTTTTTGTGTCGATGTTGTTGCCATGCCTCTGCTACCTAAAGATTAAGAAAGCTGCAAGAGAGTTTGGATTGGAGTTGATAATAATTTGTGGGATTTTGTTGATAGGAGTTATTGTTGGAGTGACAGGTACTTATACTTCTCTTGTACAAATTGTACATCATCTTTGA 1227 42.87 MQGEKQLPLSYQPGKGTTFLRTCLNGINALSGVGILSIPYALAQGGWLSLILLFLVATLCWYTGLLLKRCMDSNPSIKTYPDIGEKAFGYRGRAVVSIVMYLELYLVAVEFLILEGDNLEKLFPKMGFKIGNLEVESKQALVLLSALVILPTTWFKNLGVLAYVSSGGVLASVALVFFVFWAGAFDGVGFHHQLDSDENLLRFRGLPTTISLFTFSYCGHAVFPMLCDSIRDRSQFSRVLIVCFIASTINYGSMAVLGYLMYGNYSKSQITLNLPINKLSTKLAIYTTLVNPFTKYAVMISPISAALEENIPLSRIRPVNILIRSLLVISTVFVALAVPFFGYIMAFIGASLSVFVSMLLPCLCYLKIKKAAREFGLELIIICGILLIGVIVGVTGTYTSLVQIVHHL 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57471624 57473560 - Bda004487.1 Bda01g02153 2153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02153 408 PANTHER OS05G0424000 PROTEIN-RELATED 13 406 - -
Bda01g02153 408 Pfam Transmembrane amino acid transporter protein 16 396 IPR013057 -
Bda01g02153 408 PANTHER OS06G0228500 PROTEIN 13 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02153 K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter) - pop:7498172 548.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02153 Bda-Chr1:57471624 Bda01g02172 Bda-Chr1:57646096 0 dispersed
Bda01g02151 Bda-Chr1:57465504 Bda01g02153 Bda-Chr1:57471624 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g918 Blo01g00429 . Bda01g02153 . . . . . Cmo04g01736 . . . . . . . Cpe01g01465 . . . . . . . . . . . . . . . . Cone6ag0582 . Lsi04g00425 Csa05g02453 Chy10g01003 Cme10g00414 . . . . . Bpe02g02340 Bma01g00101 . . . . Cma04g01658 . Car04g01698 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01124 . 1 306 Amino Acid/Auxin Permease AAAP Family AT5G16740 61.4 3.0e-97 352.4
Bda03g00788 . 48 197 Amino Acid/Auxin Permease AAAP Family AT5G02170 68.0 7.8e-54 208.4
Bda05g01021 . 45 476 Amino Acid/Auxin Permease AAAP Family AT2G41190 67.1 7.3e-159 557.4
Bda13g01737 . 24 461 Amino Acid/Auxin Permease AAAP Family AT3G30390 74.0 1.5e-182 636.0
Bda13g01748 . 24 456 Amino Acid/Auxin Permease AAAP Family AT3G30390 73.2 3.7e-178 621.3
Bda07g01045 . 1 348 Amino Acid/Auxin Permease AAAP Family AT3G30390 76.1 3.6e-149 525.0
Bda03g00158 . 19 454 Amino Acid/Auxin Permease AAAP Family AT3G30390 58.7 7.1e-145 510.8
Bda01g01214 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.4 8.2e-137 483.8
Bda01g01233 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.1 1.2e-135 479.9
Bda01g02153 . 17 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 51.9 1.8e-107 386.3
Bda01g02151 . 4 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 50.2 8.8e-107 384.0
Bda01g02172 . 17 404 Amino Acid/Auxin Permease AAAP Family AT3G28960 51.9 4.9e-105 378.3
Bda13g01737 . 19 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 69.8 1.3e-175 612.8
Bda13g01748 . 19 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 68.6 2.6e-171 598.6
Bda07g01045 . 1 346 Amino Acid/Auxin Permease AAAP Family AT5G38820 71.8 5.1e-143 504.6
Bda03g00158 . 34 449 Amino Acid/Auxin Permease AAAP Family AT5G38820 58.9 1.2e-141 500.0
Bda05g00505 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.6 7.7e-190 660.2
Bda05g00518 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.2 2.9e-189 658.3
Bda03g00788 . 17 197 Amino Acid/Auxin Permease AAAP Family AT5G02180 59.9 1.2e-58 224.6
Bda03g00788 . 3 197 Amino Acid/Auxin Permease AAAP Family AT3G09330 61.0 2.5e-61 233.4
Bda03g00788 . 3 197 Amino Acid/Auxin Permease AAAP Family AT3G09340 60.5 1.9e-61 233.8
Bda15g00390 . 1 248 Amino Acid/Auxin Permease AAAP Family AT2G39130 61.7 4.2e-74 275.8
Bda01g01214 . 97 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.7 7.4e-107 384.0
Bda01g01233 . 97 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.1 1.4e-105 379.8
Bda14g00218 . 1 435 Amino Acid/Auxin Permease AAAP Family AT3G56200 61.4 1.3e-140 496.5
Bda15g00390 . 1 249 Amino Acid/Auxin Permease AAAP Family AT3G54830 54.3 5.2e-62 235.7
Bda03g00788 . 3 197 Amino Acid/Auxin Permease AAAP Family AT3G54830 52.3 4.7e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000580 6 2 3 3 5 2 3 2 2 5 2 2 3 4 3 3 2 4 3 2 3 4 5 3 4 3 6 3 5 7 104