Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02170 ATGTCCTCCTCGATTTGCTCTTCGTTTCGGAGTTTGGTGCCTCAATGGAGACGCACGAATGTTCGGTTCTTGATTTTCCTTCACTCCAAGAGCACGATTAGCTTTTCCCCTCGCGTTTTTGCTTCGTTGTCGGTTGAAGATTCTGTTTCAATGCCCAAACCAGCGCAGTTGACCAGTTGGCAGTTCATTCACAATTCGCTGAATCCAATTTCAGGAATGCTACTTCAGAAGTACCACAGGTCCTGGTTTGGTCCAAGTGGCCAGTATATCAAAGAGCTGCCTTGCCCAAATTGCCGGGCCAGGGGCTATACCCCTTGTTCTGAATGTGGAATTGAAAGATCCAGAGCTGACTGCTCAGGGATAATGACATGTCAGCAGTGTTCGGGAGATCGCGTCATTTGGGAAGAATCCATTGATGAAAGACCATGGGAGAAAGTGCGCTCTAAATCTCCTCTCCGAATGAAGGAAGATGATGAAGTGGACAACTTAAATATAAAACTGGAAGAAAAGAAGAAATCAAAGCGAATATATCAATCGCCATCCCGTGAAGTTGGATTAAAATTTAGTCGATCACTAAAAAGTCTCAATGCAAAAACAGGAATTTTTAGTAAAAGAATGAAAATTAACCATGGTGATCCCGCTCTTCAAGCACATAGGGTGGCTGCAATCAAGAAAGCCAAAGGAAGTGATGCAGCGAGAAAGAAAGCCTCTGACGCTCAAAAAGCTTTCTTTAGTGACCCGGAAAACCGAAGGCTGAGGAGTATAGCCATGAAAGGTGTCAACTTTTACTGCAAAAACTGTGGAAAGGAGGGCCATAGAAGACACTACTGTCCAGAACTTGGCTTGGTCAGCCGGAAGTTCAAATGTCCGGCATGTGGCAAAAAGGGCCATAATATGAGAACTTTCTCGAATTTAGGAAGGATAAGCAATAAGCATTGCAGAGTAGGTGGGGAAAGTGGTCACATCGGAAGGACTTGCCAGATTTTGGTATCTAACTCTGAATCTAAACTAAGCAATCAAAATGGTAAGGCGAAGCTTCGTAGCAGCCGAATTTGTCGTCAAATGGGTCATAATCGGCGGAAGTGTCCGACGAAGATGACAATAAATTTATCCGAAATGGATGGGAAAGCTATCGTTTTGAAGTTAAGGAGAAGGAAATATACTTGCGGGTTTTGTGGAGAGGACAGGCATAATGTAAGAACATGCCTTCATTGGACAGATGAATTACTTGCAGATCAATCGACCAATTGA 1251 43.73 MSSSICSSFRSLVPQWRRTNVRFLIFLHSKSTISFSPRVFASLSVEDSVSMPKPAQLTSWQFIHNSLNPISGMLLQKYHRSWFGPSGQYIKELPCPNCRARGYTPCSECGIERSRADCSGIMTCQQCSGDRVIWEESIDERPWEKVRSKSPLRMKEDDEVDNLNIKLEEKKKSKRIYQSPSREVGLKFSRSLKSLNAKTGIFSKRMKINHGDPALQAHRVAAIKKAKGSDAARKKASDAQKAFFSDPENRRLRSIAMKGVNFYCKNCGKEGHRRHYCPELGLVSRKFKCPACGKKGHNMRTFSNLGRISNKHCRVGGESGHIGRTCQILVSNSESKLSNQNGKAKLRSSRICRQMGHNRRKCPTKMTINLSEMDGKAIVLKLRRRKYTCGFCGEDRHNVRTCLHWTDELLADQSTN 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57615529 57618926 + Bda004509.1 Bda01g02170 2170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02170 416 SMART c2hcfinal6 350 364 IPR001878 GO:0003676|GO:0008270
Bda01g02170 416 SMART c2hcfinal6 312 328 IPR001878 GO:0003676|GO:0008270
Bda01g02170 416 SMART c2hcfinal6 263 279 IPR001878 GO:0003676|GO:0008270
Bda01g02170 416 SMART c2hcfinal6 288 304 IPR001878 GO:0003676|GO:0008270
Bda01g02170 416 SMART c2hcfinal6 388 404 IPR001878 GO:0003676|GO:0008270
Bda01g02170 416 SUPERFAMILY Retrovirus zinc finger-like domains 261 301 IPR036875 GO:0003676|GO:0008270
Bda01g02170 416 ProSiteProfiles Zinc finger CCHC-type profile. 264 279 IPR001878 GO:0003676|GO:0008270
Bda01g02170 416 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 8 304 - -
Bda01g02170 416 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 312 404 - -
Bda01g02170 416 Gene3D - 330 409 - -
Bda01g02170 416 Coils Coil 153 173 - -
Bda01g02170 416 Gene3D - 256 306 - -
Bda01g02170 416 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 8 304 - -
Bda01g02170 416 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 312 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02170 Bda-Chr1:57615529 Bda01g02256 Bda-Chr1:58334558 0 dispersed
Bda01g02170 Bda-Chr1:57615529 Bda01g02171 Bda-Chr1:57626105 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02170 - - csv:101211176 469.544