Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g02171 | ATGTCCTCCTCGATTTGTTCTTCGTTTCGGAGTTTGGTGCCTCAATGGAGGCGCACGAATGTTCGGTTCTTGATTTTCCTTCACTCCAAGAGCACGATTAGCTTTTCCCCTCGCGTTTTTGCTTCGTTGTCGGATGAAGATTCTGTTTCAATGCCCAAACCAGCGCAGTTCGGTTATGATCCCTCGGCGGAGTTGTATGGACTGGTCGTCGATGCGAAACGAAGGAATGCTACTTCAGAAGTACCTGAACCCAGGTCCTGGTTTGGTCCAAGTGGCCAGTATATCAAAGAGCTGCCTTGCCCAAATTGCCGGGCCAGGGGCTATACCCCTTGTTCTGAATGTGGAATTGAAAGATCCAGAGCTGACTGCTCAGGGATAATGACATGTCAGCAGTGTTCGGGAGATCGCGTCATTTGGGAAGAATCCATTGATGAAAGACCATGGGAGAAAGTGCGCTCTAAATCTCCTCTCCGAATGAAGGAAGATGATGAAGTGGACAACTTAAATATAAAATTGGAAGAAAAGAAGAAATCAAAGCGAATATATCAATCGCCATCCCGTGAAGTTGGATTAAAATTTAGTCGATCACTAAAAAGTCTCAATGCAAAAACAGGAATTTTTAGTAAAAGAATGAAAATTAACCATGGTGATCCCGCTCTTCAAGCACATAGGGTGGCTGCAATCAAGAAAGCCAAAGGAAGTGATGCAGCGAGAAAGAAAGCCTCTGACGCTCAAAAAGCTTTCTTTAGTGACCCGGAAAACCGAAGGCTGGGGAGTATAGCCATGAAAGGTGTCAACTTTTACTGCAAAAACTGTGGAAAGGAGGGCCATAGAAGACACTACTGTCCAGAACTTGGCTTGGTCAGCCGGAAGTTCAAATGTCCGGCATGTGGCAAAAAGGGCCATAATATGAGACTCGATAAGTACGTCCGGACGCCGAAAATATACGAATCCTATCTATACTACGAGAAGTCATTGAAATCAATCGATCAACTTGTCGCGTTGCTTGTGTAA | 1014 | 45.07 | MSSSICSSFRSLVPQWRRTNVRFLIFLHSKSTISFSPRVFASLSDEDSVSMPKPAQFGYDPSAELYGLVVDAKRRNATSEVPEPRSWFGPSGQYIKELPCPNCRARGYTPCSECGIERSRADCSGIMTCQQCSGDRVIWEESIDERPWEKVRSKSPLRMKEDDEVDNLNIKLEEKKKSKRIYQSPSREVGLKFSRSLKSLNAKTGIFSKRMKINHGDPALQAHRVAAIKKAKGSDAARKKASDAQKAFFSDPENRRLGSIAMKGVNFYCKNCGKEGHRRHYCPELGLVSRKFKCPACGKKGHNMRLDKYVRTPKIYESYLYYEKSLKSIDQLVALLV | 337 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 57626105 | 57633286 | + | Bda004510.3 | Bda01g02171 | 2171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g02171 | 337 | PANTHER | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | 8 | 306 | - | - | |
| Bda01g02171 | 337 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 8 | 306 | - | - | |
| Bda01g02171 | 337 | Coils | Coil | 158 | 178 | - | - | |
| Bda01g02171 | 337 | ProSiteProfiles | Zinc finger CCHC-type profile. | 269 | 284 | IPR001878 | GO:0003676|GO:0008270 | |
| Bda01g02171 | 337 | Gene3D | - | 226 | 307 | - | - | |
| Bda01g02171 | 337 | SUPERFAMILY | Retrovirus zinc finger-like domains | 266 | 305 | IPR036875 | GO:0003676|GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g02171 | Bda11g01245 | CCT | |
| Bda01g02171 | Bda11g01245 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g02147 | Bda-Chr1:57405014 | Bda01g02171 | Bda-Chr1:57626105 | 5.07E-14 | dispersed | |
| Bda01g02149 | Bda-Chr1:57418357 | Bda01g02171 | Bda-Chr1:57626105 | 4.97E-14 | dispersed | |
| Bda01g02171 | Bda-Chr1:57626105 | Bda01g02256 | Bda-Chr1:58334558 | 0 | dispersed | |
| Bda01g02170 | Bda-Chr1:57615529 | Bda01g02171 | Bda-Chr1:57626105 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g02171 | - | - | tcc:18610478 | 459.144 |