Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02180 ATGCACGCCAAATCCATTCTCTTCTTCATTTTCTTCATCCTCCTCCTTTTCTCGTTTTCTATCTTCCTCGGCACCATTGATCCCAGATCATACTTCTTCCCCTCGTTCCAATTACCTTCCGTTTGTGCTCCACCTGACCCTCCTCTCAGAGTTTTTATGTACGATCTCCCCCCTCGGTTCAACGTTGCAATGCTTAACCGCAGAACCCCCTTCCAGAATCCAGTCACGGTCTCCACCTGGCCGCCTTGGCCCAAATATTCCGGCCTCAAGAAGCAGCACAGCGTGGAGTACTGGATGATGGGCTCGCTTTTGTTCCCTGCCGATGAGAGTGGTGCTGGGAGGGAGGCTGTAAGAGTTTTGGATCCCGAAATGGCCGATGTTTTTTTCGTCCCCTTCTTCTCTTCCTTGAGTTTCAATACGCACGGTCATAATATGACTGATCCAGATACTGAGATTGATCACCAATTGCAGATTGATTTACTGAAAATCTTGCAAGAGTCTAAGTTTTGGCAGAGGTCTGGAGGAAGGGACCATGTTATTCCTTTGACCCACCCAAATGCTTTTAGGTTTCTTCGACAACATGTCAATGCCTCGATTCTAATTGTTGTAGATTTCGGTCGATATCCAAAAACCATGTCCAATCTTGAAAAGGATGTAGTCTCTCCATATGTACATGTAGTGAATTCTTTTGTTGACGATGACCCACAAGACCCATATGAGTCTCGCACAACACTTTTATTCTTTCAGGGGAGGACATTCAGGAAAGATGAGGGCATTATCCGTGTTAAACTAGCAAAAATTTTAGCTGGGTATGACGATGTTCATTATGAACGGAGTGCTGCATCAACAGAAAGCATTGAAGCGTCTTCTCGAGGGATGCGTTCGTCAAAGTTCTGTCTGCATCCAGCTGGAGACACTCCATCGTCATGTCGCCTGTTTGATGCCATAGTGAGTCACTGTGTTCCTGTCATTGTGAGTGATCGAATTGAGCTGCCATACGAGTCTGAGATAGACTATGCTGAGTTCTCATTGTTTTTCTCCTTCGATGAGGCATTGGAACCTGGGTACATGGTTGATAAACTAAGGCAATTTCCAAAGGAGAGGTGGATCCAAATGTGGGGAAGGCTTAAAAACATCTCTCATCATTTTGAATTCCAGTATCCCCCGAGAAAGGAAGATGCAGTGAACATGTTGTGGAGACAGGTGAAGCAGAAGCTTCATAAGGTTAAACTTGGTTTGCATAGAAGAGATCGGCTGAAAATTCCGGACTGGTGGCAAAGAAGGAAATGA 1290 45.35 MHAKSILFFIFFILLLFSFSIFLGTIDPRSYFFPSFQLPSVCAPPDPPLRVFMYDLPPRFNVAMLNRRTPFQNPVTVSTWPPWPKYSGLKKQHSVEYWMMGSLLFPADESGAGREAVRVLDPEMADVFFVPFFSSLSFNTHGHNMTDPDTEIDHQLQIDLLKILQESKFWQRSGGRDHVIPLTHPNAFRFLRQHVNASILIVVDFGRYPKTMSNLEKDVVSPYVHVVNSFVDDDPQDPYESRTTLLFFQGRTFRKDEGIIRVKLAKILAGYDDVHYERSAASTESIEASSRGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVIVSDRIELPYESEIDYAEFSLFFSFDEALEPGYMVDKLRQFPKERWIQMWGRLKNISHHFEFQYPPRKEDAVNMLWRQVKQKLHKVKLGLHRRDRLKIPDWWQRRK 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57789746 57791735 - Bda004522.1 Bda01g02180 2180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02180 429 PANTHER EXOSTOSIN FAMILY PROTEIN-RELATED 23 411 - -
Bda01g02180 429 Pfam Exostosin family 47 360 IPR040911 -
Bda01g02180 429 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 23 411 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02180 - - K23200 jre:108982516 672.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02180 Bda11g00397 CCT
Bda01g02180 Bda11g00397 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02180 Bda-Chr1:57789746 Bda11g01702 Bda-Chr11:51257232 1.33E-102 dispersed
Bda01g02180 Bda-Chr1:57789746 Bda02g00497 Bda-Chr2:45886597 5.22E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g141 . . Bda01g02180 . . . . . . Cmo18g00542 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00952 . Cec01g0977 Cco01g1024 Clacu01g0983 Cmu01g0936 Cre01g0865 . . . .
Vvi1g1227 Blo01g00359 . Bda01g02180 Bda11g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00397 . . Bma01g00011 Bma06g01354 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011254 1 1 1 1 0 1 2 1 1 0 0 1 1 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 31