Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02182 ATGCCGATCGCTTCCTTTTCGTTACTCCGCCTCCGCATCACCTCCTTCTCCCCTCTCCCCTCTTCCGCAAGCTTCCTGCGTCGCCTCTCAATTTCCGCCAAACAACACCAAAATTCTACAAAACCTCAGCTCAATAAGAACATTCTGAGGGCCAGAAACAACTTCAAGGACTTCTCCTCCCTCGCCCCGATTCTTTCTCCTGATCACAGTTCTCCTCTCTCCGAGTCTCAAGCCATTGGAACTGTTGCCGCCGCCCAAGCCAACTTCATGCGCGTTATCGTGCAGTCGCAAGTTACGAATTCAGCGGAGGAAGGTTCGAGAGTCGGACTTGAGTTGTTGTGCGTCGTGAAAGCGGTGCTGAAGAAGATAAAGAGAAGGGTTCTGGTGGGGGACAAGGTGGTTGTGGGCTCCATTGATTGGGTGGATCGGAGGGGCGTGATCGAGAATGTGTTCCAGAGAAGCTCCGAGATTCTTGATCCACCAGTGGCCAATGTCGACCATTTACTCCTCCTCTTCTCGTTGGAGCACCCAAAACTAGAGCCTTTCTCACTCACCAGGTTTCTTGTAGAGGCTGAGTCCACCCATATTCCACTCACTCTTGCTCTCAACAAGTCGGAACTTGTTGACGAGGAGACTATGGTGAACTGGAAATCTAGGCTGCAAAAGTGGGGATACGAACCACTATTTTGCAGTGTTGAAACCAGAAGTGGACTCGATTCCCTAGCATTCATTTTGAGAGATCAAACAACTGTCATCGTTGGTCCTAGTGGAGTTGGGAAATCAAGTCTGATTAATGCTCTTAGAAACCATAACTCTGCTGCTGCTCCTGTAGAGGGTGATAATTGGTTTGAACCTGTACCTTTACGGTATGTTCCGTTTATTACACCTGTTCAGATTTTAGGCAGCAAGTGGTTTCAAGAACAGCGAGTTGGGGAAGTCTCGACGAGAAGTGGCAGAGGGAAGCACACCATACAGAAGATGCTCGGTGCCAGCGAAGGTGCAAGATGCTCGTTCAAAGATTGCTTGCATCTAGGAGAACCGGGATGCATTGTTAAAGCCGATTGGGAAAGATATCAGTACTATTTTCAACTTGTCGACGAAATTAGGGTGAGGGAAGAGTTTCAGCTGAGGACGTTTGGAACGAAAAGAGAGGGCGATGTAAGGTACAAGGTTGGAGACATGGGTGTTCAACAAGCAGAACCAAGGTTGGAGCCCAAAAAGCATAGGAGACAATCTCGCAAGAAACTGAACCAGTCATTGCTGGATGAGTTGGATGAGTTGGATGAGGAAAATGATCCAATTATGAGGGCAATGAGGAATGAAAGCCATTAG 1332 48.35 MPIASFSLLRLRITSFSPLPSSASFLRRLSISAKQHQNSTKPQLNKNILRARNNFKDFSSLAPILSPDHSSPLSESQAIGTVAAAQANFMRVIVQSQVTNSAEEGSRVGLELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGVIENVFQRSSEILDPPVANVDHLLLLFSLEHPKLEPFSLTRFLVEAESTHIPLTLALNKSELVDEETMVNWKSRLQKWGYEPLFCSVETRSGLDSLAFILRDQTTVIVGPSGVGKSSLINALRNHNSAAAPVEGDNWFEPVPLRYVPFITPVQILGSKWFQEQRVGEVSTRSGRGKHTIQKMLGASEGARCSFKDCLHLGEPGCIVKADWERYQYYFQLVDEIRVREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKKLNQSLLDELDELDEENDPIMRAMRNESH 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57801499 57803499 - Bda004524.1 Bda01g02182 2182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02182 443 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 325 431 - -
Bda01g02182 443 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 68 326 - -
Bda01g02182 443 ProSiteProfiles EngC GTPase domain profile. 163 306 IPR010914 GO:0003924|GO:0005525
Bda01g02182 443 Gene3D Probable gtpase engc; domain 3 329 374 - -
Bda01g02182 443 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 325 431 IPR004881 GO:0003924|GO:0005525
Bda01g02182 443 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 68 326 IPR004881 GO:0003924|GO:0005525
Bda01g02182 443 Coils Coil 410 430 - -
Bda01g02182 443 Pfam RsgA GTPase 150 325 IPR010914 GO:0003924|GO:0005525
Bda01g02182 443 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 347 IPR030378 GO:0005525
Bda01g02182 443 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 271 IPR004881 GO:0003924|GO:0005525
Bda01g02182 443 SUPERFAMILY Nucleic acid-binding proteins 78 153 IPR012340 -
Bda01g02182 443 MobiDBLite consensus disorder prediction 399 422 - -
Bda01g02182 443 Gene3D - 151 328 IPR027417 -
Bda01g02182 443 Gene3D - 71 150 IPR012340 -
Bda01g02182 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 368 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02182 K06949 rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] - tcc:18609029 597.816
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1221 Blo01g00361 . Bda01g02182 . Bpe13g00529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010562 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 32