Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02187 ATTGAAACAGTGGATCAGAATCCAGTCGTCGTTATAATTGGAGAGACAGGTTCCGGGAAGAGCACTCAACTCTCACAGATACTTCACAGAAGAGGATATACAAAGTCAGGAACTGTCGGGGTCACTCAGCCTCGTCGAGTGGCCGCTGTCTCTGTTGCCCGACGAGTTGCAAAGGAGCTAGGTGTTCCCCTTGGCGACGAAGTAGGATATGCTATACGATTTGAAGACAGAACTTCAGAAAGAACAAGGATCAAGTATGTTGCTAAACTTGTCTTCATCTTCATTCTTTGCTGCTGTTTGATGTTTCAATGCTTTATAATCAGAGATATATTGCTTGGACTTATGAAACGACTGGTTAGACGCCGTACATCCAATTTAAAGGTTCTAATCACTTCAGCAACCCTTGATGGAGATAAAGTATCAAAATTCTTTTCAGATTGCCCTGTTCTGACAATTCCAGGGAAGTTGTTTCCCGTTGAGATTTTTTACAGCAATGAGCTTCCTAAAAGCTATATTGAGTCATCTTTAAAGGCAGCTCTTGATATACACGTACGAGAACCGGAGGGGGACGTTCTAATTTTCATGACGGGACAGGTTCGTGTATTTAGTCCTCCACCACCAAATTGTCGCCGGTTTATTGTTGCCACAAACATAGCTGAAACTTCTTTGACCGTTGATGGTGTTGTGTATGTTATTGATGCCGGTTATGTCAAGCAGCGGCAATATAATCCTTCGACTGGCATGAACTCCCTTGATGTTGTGCAAATTAGCAAAGTGCAAGCAGCGCAGCGTGCAGGACGAGCAGGAAGAACACGTAGTGGGAAATGCTATCGTTTGTACCCAAAGATAGTTTATGACGATAAATTCCTGGATGTAACAGTTCCTGAAATACAAAGAACATCTCTTGCTGGCAGTGTTCTTCATTTGAAATCATTGGACCTTTCCGATATTGATATTCTACAATTTGACTTTCTTGATCAACCTACCTCTGAGTCTTTAGAAGACGCATTGAAACAACTATATCTCATTGATGCTATTGATGAAAATGGATCAATCACAAGAATTGGACAAATTATGGCTGAGCTTCCTCTAGAACCGTCACTCTCAAGAACCCTTATAGAGGCAAATGAGTATGGTTGTATATCACAGGCTTTGTCTGTTGCTGCTATGCTATCAGCTGAAACCACATTGCTTCCTGGTCGCAGCAAGAGTACTGAAAAGAAAAGAAAGCACACTTCCTCGGACCTCCCGGATGGTTTTGGATGGGGTGATCACATCCAGTTACTGCAGATCTATGAACACTGGGATCGTAGAAACTATGACATTGACTGGTGTAAAGACAATGGCTTGCAGGTGCGAGGAATGATGTTTGTCAAAGATGTCCGGAAACAGCTGTCTCAGATAATGCAGAAGATAGCAAAGGATGCCAACAGACGAGTAAAAGATAGGCAGGAGGATTATCAGAGTTTGAGGAAGGCTTTGTGTGTAGGCTATGCTAATCAACTTGCTGAGAGAATGATGTACCACAATGGTTATCGAACTCTAAATTTTAAGCCCCAAGTAGTTCAGGTGCATCCATCTTCTGTTCTCAAACCGGACGAAGAAGGAAAGCTTGCTGACTATGTTGTCTACCATGAGCTAATAACGACATCACGACCGTACATGCGAAATGTATGTGCTGTGGACATGAGATGGGTCATGCCCATTTTGAACAAGGTTAAAAATCTGAATGTTAGAAAACTGAGTGGCGGCTCTGATCCATCGAAGGAGACGATGGAAGAAACAGATGAGGATTTTCCAAAGAAAGAGCCTGATGCCACCAAAGCGCCTGATGATCGGGAGAGTAGAGTTCAGGCGGCAAGAGAACGATATTTAGCTCGGAAAGGGAAGAAG 1893 43.05 IETVDQNPVVVIIGETGSGKSTQLSQILHRRGYTKSGTVGVTQPRRVAAVSVARRVAKELGVPLGDEVGYAIRFEDRTSERTRIKYVAKLVFIFILCCCLMFQCFIIRDILLGLMKRLVRRRTSNLKVLITSATLDGDKVSKFFSDCPVLTIPGKLFPVEIFYSNELPKSYIESSLKAALDIHVREPEGDVLIFMTGQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDAGYVKQRQYNPSTGMNSLDVVQISKVQAAQRAGRAGRTRSGKCYRLYPKIVYDDKFLDVTVPEIQRTSLAGSVLHLKSLDLSDIDILQFDFLDQPTSESLEDALKQLYLIDAIDENGSITRIGQIMAELPLEPSLSRTLIEANEYGCISQALSVAAMLSAETTLLPGRSKSTEKKRKHTSSDLPDGFGWGDHIQLLQIYEHWDRRNYDIDWCKDNGLQVRGMMFVKDVRKQLSQIMQKIAKDANRRVKDRQEDYQSLRKALCVGYANQLAERMMYHNGYRTLNFKPQVVQVHPSSVLKPDEEGKLADYVVYHELITTSRPYMRNVCAVDMRWVMPILNKVKNLNVRKLSGGSDPSKETMEETDEDFPKKEPDATKAPDDRESRVQAARERYLARKGKK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57839586 57845959 + Bda032995 Bda01g02187 2187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02187 631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 139 313 IPR001650 -
Bda01g02187 631 CDD SF2_C_RHA 157 280 - -
Bda01g02187 631 SMART helicmild6 170 272 IPR001650 -
Bda01g02187 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 473 IPR027417 -
Bda01g02187 631 Pfam Helicase associated domain (HA2) 336 438 IPR007502 GO:0004386
Bda01g02187 631 Pfam Helicase conserved C-terminal domain 206 271 IPR001650 -
Bda01g02187 631 SMART ha2_5 335 429 IPR007502 GO:0004386
Bda01g02187 631 Coils Coil 473 493 - -
Bda01g02187 631 MobiDBLite consensus disorder prediction 579 631 - -
Bda01g02187 631 CDD DEXHc_RHA-like 7 152 - -
Bda01g02187 631 Gene3D - 1 96 IPR027417 -
Bda01g02187 631 Gene3D - 106 155 IPR027417 -
Bda01g02187 631 PANTHER OS06G0343100 PROTEIN 198 569 - -
Bda01g02187 631 PANTHER OS06G0343100 PROTEIN 1 199 - -
Bda01g02187 631 Gene3D - 156 199 IPR027417 -
Bda01g02187 631 Gene3D - 200 292 IPR027417 -
Bda01g02187 631 SMART ultradead3 1 162 IPR014001 -
Bda01g02187 631 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 490 571 IPR011709 -
Bda01g02187 631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 153 IPR014001 -
Bda01g02187 631 PANTHER ATP-DEPENDENT RNA HELICASE 198 569 - -
Bda01g02187 631 PANTHER ATP-DEPENDENT RNA HELICASE 1 199 - -
Bda01g02187 631 Gene3D - 319 476 - -
Bda01g02187 631 MobiDBLite consensus disorder prediction 586 624 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02187 K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] - qsu:112022268 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02187 Bda-Chr1:57839586 Bda12g00392 Bda-Chr12:4659941 2.28E-155 dispersed
Bda01g02183 Bda-Chr1:57807733 Bda01g02187 Bda-Chr1:57839586 4.63E-136 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1173 Blo01g00369 . Bda01g02187 . Bpe13g00524 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007202 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 1 37