Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02188 ATGGCAGCTGGAAGACATGGGGGTTATCGTGATAATGAGTTCAGGGACCGTGAATCCAACTTCGAAGTGCCAAGGAGAGGTTTAAGTACTACAAAGCAAGAATTTGAACGGGATAGAAATCGTAATCAGGATAGTGAAAGCAGTAGAGTTCAGGATTTAAGAGGCAGGGGTAGGGTTAGGCAAAGGGATATCAAAGAGAGAGAAGCGGTCAATGGTGATACTCATTCCTTTTCAAGGAGTAATTCGGGCAATAGCAGTGGAGGCATTGACCTTGGACCCAGGAGAATTCAGTTTCCTGTTAGGACGACAGATAGGGAACCAGGTGAATTATCTAGTGAGAGTGGTTCAGATGATGCCACTGAATCGAACTTGCAGATTAAAGACAGGGAAGGTGTGAATGTATCTGAGAACGGAAGATCTCCGGTAGTCACGAAGAGGAAGTTTTCTCCTATAGTATGGGACATAGATGATGATGCAAGAAGTAACTCATCAAAACGGAGGATTAATCCTACAACTACAGCTCTTCCCCCTCCACCACCACTACCTAAGGTGTATCGTGAGTCTCCCAGTGTTATGCCAGATGGAGGTGTTCTCATATCTCCTATCGAAGAATTGCAGTCTTCTTTCCCAGTTCCATCTTGTGAGCTGCCTGAGTTGGATGGGGCTTTGATGTCCCAGTCTCCTGTAAGATTGTCTTCTATCACATCGGGACAGGTATTGGATAGTAACGTTGAAGCTGGGCATTTAGAAGATGACGACTATGTTCCAACAAGAAATATATCTTCTTCAAGATGGGCAGCCGGTAATAACTCTCCAGGTGATGAAGGTGAATTTTTTGAAGATGACTTGATGCTAAAAAGGCAGCGGAAAATTTCACATTCTGAGTCTTTGGATACCAGATTGAGCAGAAAATCCTTAAGTCCTGAAGATGGGGAGGTTAAGAAACAAGGCTCTGAAGCAAACAGGGCGAGGTCATCTGATTCTGACGACTTACCACATAGTGCAAGGTCTATTAGTAGAGATGATGATCCTGGTAATGAATCTGGGAGGGAAGATAGCATGGATGTTGATGAGGATGATCATAAAAATCTTGCTAATGCTAGTCGGTCAAATACAGATTCTGACTATGAGGACGATCCTTGTCTGACACCTGAACGGTCAGTTCCTCAGAGAAATGTAAACATGCTTCAAGGTTGCAGAAGTGTTGATGAGTTTGAGAGATTAAACAAAATTGATGAAGGAACGTATGGTGTTGTATATAGAGCCAGAGACAAGAAAACTGGTGAAATTGTGGCATTGAAGAAAGTGAAAATGGAGAAGGAAAGAGAAGGTTTTCCACTGACATCTTTGAGGGAAATAAACATTCTTCTTTCATTTCATCACCAGTCAATTGTAGATGTCAAGGAAGTTGTAGTGGGAAGTAGTCTTGATAGTATTTTCATGGTAATGGAGTACATGGAACATGATCTTAAGGGACTTATGGAATCAATGAAGCAGCCATTTAGTCAGAGTGAAGTCAAATGCCTAATGATTCAGCTACTAGAGGGAATTAAATATCTCCATGATAACTGGGTGCTCCATCGGGATTTAAAGACATCTAATTTGCTTTTGAACAATCGAGGCGAGTTGAAGATTTGTGACTTTGGGTTGGCTCGGCAATATGGTAGTCCTTTAAAACCATATACTCATTTAGTTGTTACACTTTGGTACCGGGCACCTGAGCTTCTGTTGGGAGCCAAACAATATTCAACTGCAATTGATATGTGGTCATTAGGTTGTATTATGGCTGAATTGTTATCAAAAGAACCTCTATTCAATGGTAAAACTGAAGTTGATCAACTAGACAAGATTTTTAGGACTCTAGGAACACCAAACGAGACAATTTGGCCTGGATTTTCCAAGCTTCCTGGAGTTAGGGTTAATTTTGTCAAGCACCAGTACAACTTGCTTCGCAAGAAATTCCCTGCTACATCATTCACTGGATCTCCAGTTCTATCTGATTCTGGATTTGATTTGTTGAACAGACTCTTAACTTATGACCCTGAGAAGCGAATAACAGTTGGAGATGCTCTTAATCATGAGTGGTTTCGGGAAGTTCCTCTTCCAAAATCAAAAGAGTTCATGCCGACTTTTCCTGCTCAACATGCACAAGACAGGCGGATGCGAAGAATAATGAAGAGCCCAGATCCCTTGGAAGAGCAGCGGAGAAAAGAACTGGAACTGAAGGAACTTGGAGCTGGTGGTCTATTTGGTTGA 2256 41.98 MAAGRHGGYRDNEFRDRESNFEVPRRGLSTTKQEFERDRNRNQDSESSRVQDLRGRGRVRQRDIKEREAVNGDTHSFSRSNSGNSSGGIDLGPRRIQFPVRTTDREPGELSSESGSDDATESNLQIKDREGVNVSENGRSPVVTKRKFSPIVWDIDDDARSNSSKRRINPTTTALPPPPPLPKVYRESPSVMPDGGVLISPIEELQSSFPVPSCELPELDGALMSQSPVRLSSITSGQVLDSNVEAGHLEDDDYVPTRNISSSRWAAGNNSPGDEGEFFEDDLMLKRQRKISHSESLDTRLSRKSLSPEDGEVKKQGSEANRARSSDSDDLPHSARSISRDDDPGNESGREDSMDVDEDDHKNLANASRSNTDSDYEDDPCLTPERSVPQRNVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHQSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGIKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNRLLTYDPEKRITVGDALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRIMKSPDPLEEQRRKELELKELGAGGLFG 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57847805 57850603 - Bda004529.2 Bda01g02188 2188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02188 751 PANTHER CELL DIVISION PROTEIN KINASE 165 751 - -
Bda01g02188 751 MobiDBLite consensus disorder prediction 158 189 - -
Bda01g02188 751 Gene3D Phosphorylase Kinase; domain 1 389 487 - -
Bda01g02188 751 Gene3D Transferase(Phosphotransferase) domain 1 488 729 - -
Bda01g02188 751 MobiDBLite consensus disorder prediction 74 88 - -
Bda01g02188 751 MobiDBLite consensus disorder prediction 279 384 - -
Bda01g02188 751 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 165 751 - -
Bda01g02188 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Bda01g02188 751 SUPERFAMILY Protein kinase-like (PK-like) 397 702 IPR011009 -
Bda01g02188 751 MobiDBLite consensus disorder prediction 113 130 - -
Bda01g02188 751 MobiDBLite consensus disorder prediction 1 141 - -
Bda01g02188 751 CDD STKc_CDC2L1 399 696 IPR045267 GO:0004674|GO:0005524|GO:0006468
Bda01g02188 751 ProSiteProfiles Protein kinase domain profile. 405 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02188 751 MobiDBLite consensus disorder prediction 8 73 - -
Bda01g02188 751 MobiDBLite consensus disorder prediction 172 186 - -
Bda01g02188 751 Pfam Protein kinase domain 405 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02188 751 SMART serkin_6 405 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02188 751 MobiDBLite consensus disorder prediction 243 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02188 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - zju:107428364 1047.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02188 Bda-Chr1:57847805 Bda02g00600 Bda-Chr2:46856943 1.61E-94 dispersed
Bda10g00416 Bda-Chr10:36417401 Bda01g02188 Bda-Chr1:57847805 1.33E-66 dispersed
Bda01g02188 Bda-Chr1:57847805 Bda15g00140 Bda-Chr15:3843627 2.64E-90 transposed
Bda01g02188 Bda-Chr1:57847805 Bda14g00385 Bda-Chr14:2781591 2.93E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69476 PF00069 Pkinase 1.90E-73 CL0016 Bda PK