Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02190 ATGCCACCCGCTTATTTTCCTCTCCGGTGGGAGAGTGCGGGGGACCAATGGTGGTACGCCTCCCCCATTGATTGGGCTGCTGCCAATGGTTTATACGACGTTGTCAGGGAGCTTCTCCACCTCGACCCCAATCTACTCATCAAACTAACTTCCCTACGCCGAATTCGCCGCCTTGAAACTGTCTGGGACGACGACGCTCAGTTCCATGATGTGGCTATATCCCGCTCTGCGGTCGCGAAAAAGCTTCTTCTCGCCGCTGAAATGAACAACGGTCAGAACTCTCTCATTCGCGCCGGTTATGGCGGTTGGCTTCTCTACACAGCTGCATCCGCGGGAGATCTGGCTTTTGTTACTGATCTGTTGCGCAGAGATCCCCTGCTCGTTTTCGGAGAAGGAGAATTGGGCGTCACTGACATATTCTACGCTGCAGCCAGAAGCAAAAACTCTGACGTTTTCAAGCTCCTGTTCCACTTCGGCATTTCGCCTACATGCTGTTTTAGCGCCGGCGGGGAGTCGGAGGAGCAGTCGCGTGAAAGTGAAATGCGTTCAACTTTCCGGTGGGAGATGATCAACCGGGCAGTTCATGCTTCGGCCAGAGGGGGGAATTTAGAGATTCTGAAAGAGCTTCTCGGGGATGACTCTGATATCTTGGTTTACAGGGATGCGCAGGGCTCCACTGTCTTGCATACAGCCGCTGGTAGAGGACAGGTTGAGGTAGTGAGAGATCTGGTTCAATCATTTGACATCGTCTCCTCCACAGATAGTCAAGGGAATACGGCTTTGCACGTTGCTGCTTACAGAGGTTACTTAGCTGTGGTGGAGGTGCTGATTCAGGCGTCCCCCTCGCTGAAAGGTCTGACCAACAACTATGGAGACACTTTTCTTCACATGGCAGTGGCTGGTTTTGTAGCCTCTGGTTTTAGAAGATTAGACAAGCAGATTGAGCTCATCAAGAGGTTGATTGGTGGTGAGCTCCTGGATATTGAAGACATCATAAATGTGAGGAACAATGAAGGAAGAACTGTTCTTCACAGGGCGGTGAGCGAGAATGTTCAGAGTGATGTTGTGGAACTCCTCATGTCTGTAGGTTGGATCGAATTGAACGTCCCTGATGGTGATGGAATGACCCCGCTTGATCTTCTCAAGCATCGTCCTCGGACAGCTTCTTCTGAAGTATTGATCAAGCAAATGATATTGGCAGGAGGAGTCGCCAACCATGGCAATTGTGTGGGGAGGAATGGATTTGTTACTCAGATGAAAATGCATGGGGTAGGGAGCAGTCCTGGAAGTTGCTTCAAAATTTCTGATGCAGAGATATTCTTGTATGCAGGAGCAGAGAGCATATCTGACGGGAGTTATCATGGATCCAGTGGAGAACTTGAAGAATGCTCGGGCGAAATAAGGGAGTCGGATTCTGCAAATTTGGTAGGCAAGAAGAAGCTGGGATCGGTAAATTATGCGGCAAGGAGGCTGAAATTTCTTCTTGGGCAAGCCAGCAAGAATGTGCAAAACTTAGGCAGCACGCTTAGGCAGAGATACTCAAACGTTGGTGGTAATAATAAAAGGAGGGTATTTTCATACACACGTACTTCTCCAAGCCCGTCGACCAAGGAGAAGTTTAGGGCTGGACTCGCACAGGGTGTGATTCAAACAGTAGCACACCAAAAGGGGGTTGAAATGGGTAGAGACGACGGGGGCACTAGCTCCAAAGCAACTTACAAATCAGGTTCCTTGAATGGCAAGTTGATGAACAAGTACTTGTGTTTTGGAACTCAAGGTGTGGCTGTGGAAGACTCCATCAGCCGTAGGAGGCTAGCAGCGTTTTAG 1827 49.7 MPPAYFPLRWESAGDQWWYASPIDWAAANGLYDVVRELLHLDPNLLIKLTSLRRIRRLETVWDDDAQFHDVAISRSAVAKKLLLAAEMNNGQNSLIRAGYGGWLLYTAASAGDLAFVTDLLRRDPLLVFGEGELGVTDIFYAAARSKNSDVFKLLFHFGISPTCCFSAGGESEEQSRESEMRSTFRWEMINRAVHASARGGNLEILKELLGDDSDILVYRDAQGSTVLHTAAGRGQVEVVRDLVQSFDIVSSTDSQGNTALHVAAYRGYLAVVEVLIQASPSLKGLTNNYGDTFLHMAVAGFVASGFRRLDKQIELIKRLIGGELLDIEDIINVRNNEGRTVLHRAVSENVQSDVVELLMSVGWIELNVPDGDGMTPLDLLKHRPRTASSEVLIKQMILAGGVANHGNCVGRNGFVTQMKMHGVGSSPGSCFKISDAEIFLYAGAESISDGSYHGSSGELEECSGEIRESDSANLVGKKKLGSVNYAARRLKFLLGQASKNVQNLGSTLRQRYSNVGGNNKRRVFSYTRTSPSPSTKEKFRAGLAQGVIQTVAHQKGVEMGRDDGGTSSKATYKSGSLNGKLMNKYLCFGTQGVAVEDSISRRRLAAF 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57859290 57861169 + Bda004531.1 Bda01g02190 2190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02190 608 Pfam Ankyrin repeats (3 copies) 195 280 IPR002110 GO:0005515
Bda01g02190 608 ProSiteProfiles Ankyrin repeat region circular profile. 223 245 - -
Bda01g02190 608 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 479 - -
Bda01g02190 608 Gene3D - 12 410 IPR036770 -
Bda01g02190 608 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Bda01g02190 608 ProSiteProfiles Ankyrin repeat profile. 256 288 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 223 252 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 290 330 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 134 164 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 338 369 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 189 218 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 18 47 IPR002110 GO:0005515
Bda01g02190 608 SMART ANK_2a 256 285 IPR002110 GO:0005515
Bda01g02190 608 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 479 - -
Bda01g02190 608 SUPERFAMILY Ankyrin repeat 105 394 IPR036770 -
Bda01g02190 608 ProSiteProfiles Ankyrin repeat region circular profile. 256 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02190 - - - qsu:111985457 717.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02190 Bda-Chr1:57859290 Bda07g00973 Bda-Chr7:11599231 3.21E-08 dispersed
Bda07g01417 Bda-Chr7:17122264 Bda01g02190 Bda-Chr1:57859290 0 transposed
Bda01g02190 Bda-Chr1:57859290 Bda10g01061 Bda-Chr10:44640053 1.14E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1145 Blo01g00371 Blo16g01188 Bda01g02190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0728 . . . . . . . . . . . . Bma06g00580 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009176 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34