Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02203 ATGAGGAGTTATATTGCAGGAACAAGAACATGGAAAGGTGCAGTGACGGCATTGGGGATTGGATTGCTTGTAGCTGGCCCTTTTATCTCTTTTTTCGCCGGAGTATCTGACGAGAAGTCCCATCTCCGGAGATGTAGATTTCCGGCCATGTTCAACTTCGGCGATTCAAATTCAGATACAGGTGGTAGAAATGCTCTGGATTATCAGCTTCCTTCTCCTTATGGAATCACTTTCCCTGGCAAACCTTACGGAAGGCTGTCTGATGGGAAAGTTATGATCGATGTTTTTGGTATGACTGACTCTCTCTCACCGGAGCTATTTCTAAGTTTTTGTTTGCTTATCACTTCTTGGTGGACGTGTGAAGCTGAGAAATTAGGGTTGCCATACTTGAGCGCGTACTTGGATTCCATGGGAGCATACTTGGATTCCATGGAAGCAGACTTTGGAGGAGGAGCGAACTTCGCGACGGCAGGATCGACGATTCAGCCACTGGATGGAACAAGTTTTGAAGCGAAATTCAGCCCCATCTCGCTCGACGTTCAACTTTTTCAGTTTATGAGACTCAAAGCACATGCTGACGAGGTTTATAGCCAAGGAAAGCTAAAATCCGCCATGAAAGACAAGCTTCCTAGACCAGAGGAGTTCTCCAAGGCTTTGTACACATTTGACATCGGACAGAATGATTTTTTCGCTGGACTGATGAAGATGACTCCCCAACAACTGACTGAAACCCTTCCGAATATCACCTTGCGCTTATCCATGGCAGTAGAAAAACTATATGAAGAAGGAGCAAGGTTTTTTTGGATACACAACACGGGTCCTATTGGATGCTTGCCTTACGCGCTTCTTTATTCCCCTCCAAGCTCGAGTATTGCAGACAACAATGGCTGCCTGGAATCTCACAACGAGTTGGCTCGGGAATTCAACCTGCAGCTCAAAACGAGGGTGATCCAGCTTAGGACCCAGCTCTCAGATGCAGTCCTCATTTACGTAGATCTGTATGCAGCCAAATACACACTCATTAGCAACGCAGAAAAATTCGGAAATTTGATTCGTTTTGCAGGTTTTAAAGATCCTCTAGGGTACTGCTGTGGAAGTGATAAGGTTCCATGTGGAAATAAAGAGGAAGAGGGTTTGAAAGGGAGAGAAGAAGGTGGAGCAGTGTGTAGGAATTCTTCAGAGTACATCAGCTGGGATGGAGCTCATTATTCAGAGGCAGCAAACAAATGGGTAGCTGACAGAATAGCAGAGGGCTCATTTTCTGATCCTCACATTTCATTGGATAAATTATGCCGCCATGGACAAGAGACTTAG 1314 45.43 MRSYIAGTRTWKGAVTALGIGLLVAGPFISFFAGVSDEKSHLRRCRFPAMFNFGDSNSDTGGRNALDYQLPSPYGITFPGKPYGRLSDGKVMIDVFGMTDSLSPELFLSFCLLITSWWTCEAEKLGLPYLSAYLDSMGAYLDSMEADFGGGANFATAGSTIQPLDGTSFEAKFSPISLDVQLFQFMRLKAHADEVYSQGKLKSAMKDKLPRPEEFSKALYTFDIGQNDFFAGLMKMTPQQLTETLPNITLRLSMAVEKLYEEGARFFWIHNTGPIGCLPYALLYSPPSSSIADNNGCLESHNELAREFNLQLKTRVIQLRTQLSDAVLIYVDLYAAKYTLISNAEKFGNLIRFAGFKDPLGYCCGSDKVPCGNKEEEGLKGREEGGAVCRNSSEYISWDGAHYSEAANKWVADRIAEGSFSDPHISLDKLCRHGQET 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57921177 57922786 + Bda004543.1 Bda01g02203 2203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02203 437 Gene3D SGNH hydrolase 36 419 IPR036514 -
Bda01g02203 437 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 15 96 - -
Bda01g02203 437 PANTHER 2, PUTATIVE-RELATED 122 433 - -
Bda01g02203 437 PANTHER 2, PUTATIVE-RELATED 15 96 - -
Bda01g02203 437 Pfam GDSL-like Lipase/Acylhydrolase 51 415 IPR001087 GO:0016788
Bda01g02203 437 SUPERFAMILY SGNH hydrolase 218 417 - -
Bda01g02203 437 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 122 433 - -
Bda01g02203 437 CDD SGNH_plant_lipase_like 48 419 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02203 - - - mdm:103452378 402.519
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02203 Bda-Chr1:57921177 Bda12g00487 Bda-Chr12:6566513 5.73E-102 dispersed
Bda01g02203 Bda-Chr1:57921177 Bda10g00988 Bda-Chr10:44132085 4.26E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g629 . . Bda01g02203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024613 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2