Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02214 ATGAGAAGTCATCACATTGCTGTGGCTTTCGCAGCTAGTTTCAGTGCTGCCTTTGTTTTCATAGTGCTTATTGCGCTTCTGGTTTGGTGGCGATACAGACATAACCAGCAAATTTTCTTTGATGTTAATGATCAATACGACCCAGAGGTATGCTTAGGCCACCTGCGAAGATACACGTTTAAGGAGCTCCGAGCAGCCACTGATCATTTTAACCCAAAGAATATTTTAGGGAGAGGAGGATTTGGAATTGTGTACAAGGGAAGCTTGAATGACGGAACTCTTGTCGCTGTTAAACGATTGAAGGACTACAATACGGCTGGTGGGGAAATACAGTTTCAGACCGAAGTAGAGATGATAAGTTTAGCAGTTCATAGAAATCTTCTCAGATTATGCGGATTTTGTTCGAATGAGAATGAACGCCTTCTTGTTTATCCCTACATGCCTAACGGAAGCGTTGCCTCCCGATTGAGAGATCGTGTTCATGGTTGTCCTGCCCTGGACTGGGTGATACGCAAGAGGATAGCTTTAGGCACTGCGAGGGGGTTGGTCTATTTACACGAGCAATGTGACCCGAAAATTATCCACCGTGATGTAAAAGCAGCTAACATATTGCTTGATGAAGACTTTGAGGCTGTGGTCGGAGATTTTGGGTTGGCCAAGCTTTTAGATCACAGAGATTCTCATGTAACCACTGCAGTTCGAGGAACTGTTGGCCACATTGCCCCAGAGTACTTATCGACCGGCCAATCATCGGAAAAAACTGATGTCTTTGGCTTCGGAATATTACTTCTCGAGCTCATAACTGGTCAAAAAGCTTTGGATTTTGGACGAGCAGCTAATCAGAAGGGCATAATGCTCGACTGGGTGAGAAAGCTCCATCAAGAGGGAAAGCTAAATCTGATGGTGGACAAGGATCTGAAGAACAACTTTGACAGAATCGAACTGGAAGAGATGGTTCAAGTGGCATTGTTGTGCACCCAGTTTAATCCTCTGCACCGGCCAAAAATGTCGGAAGTATTAAAGATGTTAGAAGGAGATGGGTTGGCTGAGAAATGGGAGGCATCTCAGCAGGTGGAGACTCCTCGATTCCGATCCAACGAACACCCTCAGAGGTATTCAGATTACATCGAAGAATCGTCGTTGGTAGTAGAGGCAATGGAGCTCTCGGGTCCGAGGTGA 1179 45.55 MRSHHIAVAFAASFSAAFVFIVLIALLVWWRYRHNQQIFFDVNDQYDPEVCLGHLRRYTFKELRAATDHFNPKNILGRGGFGIVYKGSLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLCGFCSNENERLLVYPYMPNGSVASRLRDRVHGCPALDWVIRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRAANQKGIMLDWVRKLHQEGKLNLMVDKDLKNNFDRIELEEMVQVALLCTQFNPLHRPKMSEVLKMLEGDGLAEKWEASQQVETPRFRSNEHPQRYSDYIEESSLVVEAMELSGPR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57998963 58000470 - Bda004554.1 Bda01g02214 2214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02214 392 Gene3D Transferase(Phosphotransferase) domain 1 147 363 - -
Bda01g02214 392 Gene3D Phosphorylase Kinase; domain 1 39 146 - -
Bda01g02214 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Bda01g02214 392 SUPERFAMILY Protein kinase-like (PK-like) 46 344 IPR011009 -
Bda01g02214 392 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02214 392 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Bda01g02214 392 SMART serkin_6 70 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02214 392 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 392 - -
Bda01g02214 392 PANTHER PROTEIN NSP-INTERACTING KINASE 3 2 392 - -
Bda01g02214 392 ProSiteProfiles Protein kinase domain profile. 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02214 Bda-Chr1:57998963 Bda03g00411 Bda-Chr3:3543626 3.27E-175 dispersed
Bda07g01052 Bda-Chr7:12392324 Bda01g02214 Bda-Chr1:57998963 0 transposed
Bda01g02214 Bda-Chr1:57998963 Bda11g01277 Bda-Chr11:13373417 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69478 PF00069 Pkinase 2.40E-43 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02214 - - fve:101308277 719.924