Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02217 ATGTTGGGAGGCAACAGTGGCAAGCACATGCTTCCTGTTTTCTTAGAAGAGAGTCAAATCCAGTTTCAGACTAATGCTTCAAATCAACTACAGTTATTTGGAAATTTACCAGTTGGGTGCGATGTTGATCAAGTAAATTATTTTTGTAATGAGCAAATTAATCCCATGCTTCATCCCAACAAACGAAGCAGGGAAAATGAAGATATCCCACAGCAAAAGCTTCAGATTTCTTTAAATTATAACCTATTCCAAGATGATGCTGATCGTTTAGCAAGTATTAGGAACCCAAATCCTGTATCAACTGGATTAAGACTGTCCTGTGATGACGATGAACATAACTCCTCTGTTACTTCTGCCAGTGGAAGCATTGCTGCTACAGCACCTTCGATACTTTTATCTCTTGGTAATAGTGTTATGACTGAGCTTGATCGGCAAAAGGAAGAGTTTGACAAGTACATCAAAATTCAGGGAGAACACATGGCGAAGGGGGTGAGGGACATGAAGCAAAGACACCTGGCTACTTTCCTTGCTGCGGTGGAGAAAGGTGTTGGCAAGAAACTCCAAGAAAAGGACTTGGAAATAGAAAACATCAACAGGAAAAACAGGGAGTTGTGTGAGAAGATAAAGCTGGTGGCTTTGGAAGCACATAATTGGCATTATAAAGCAAAATACAATGAATCAGTTGTAAATGTCCTCAAGAGCAACCTCAAACAGGCAATCTCACAAGGAGCTGAGCAGGGAAAAGAAGGATTTGGCGACAGTGAAGGCGACGATGCTTCCTCACATGTTGATGCCAATAATTATCTCAGAACTCAATGCGGGACTGTGAAATCTTCAGGTGGGAATAACCAGAGCACGAAGCAGCATATGATTTGCAGAGCGTGCAACTCGAAGGAGATTTCAATTTTGTTGCTTCCTTGTAGACATCTATGTTTGTGTATTGGTTGTGAAGGATCAGTCCGTGTGTGTCCAGTTTGTCACTCCATGAAATCCTCTGGAATCCAAGTGTACATATCCTAA 1020 41.47 MLGGNSGKHMLPVFLEESQIQFQTNASNQLQLFGNLPVGCDVDQVNYFCNEQINPMLHPNKRSRENEDIPQQKLQISLNYNLFQDDADRLASIRNPNPVSTGLRLSCDDDEHNSSVTSASGSIAATAPSILLSLGNSVMTELDRQKEEFDKYIKIQGEHMAKGVRDMKQRHLATFLAAVEKGVGKKLQEKDLEIENINRKNRELCEKIKLVALEAHNWHYKAKYNESVVNVLKSNLKQAISQGAEQGKEGFGDSEGDDASSHVDANNYLRTQCGTVKSSGGNNQSTKQHMICRACNSKEISILLLPCRHLCLCIGCEGSVRVCPVCHSMKSSGIQVYIS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58015152 58016812 + Bda004557.1 Bda01g02217 2217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02217 339 Coils Coil 187 214 - -
Bda01g02217 339 PIRSF SBP1_RNase_bind 1 339 IPR017066 -
Bda01g02217 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 339 IPR013083 -
Bda01g02217 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Bda01g02217 339 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 338 - -
Bda01g02217 339 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 338 IPR017066 -
Bda01g02217 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02217 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - cpap:110813081 501.516
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02217 Bda11g01274 CCT
Bda01g02217 Bda11g01274 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02217 Bda-Chr1:58015152 Bda06g01301 Bda-Chr6:43697311 2.90E-33 dispersed
Bda08g00991 Bda-Chr8:20209386 Bda01g02217 Bda-Chr1:58015152 3.70E-24 dispersed
Bda01g02217 Bda-Chr1:58015152 Bda11g01274 Bda-Chr11:13349207 1.08E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g672 . . Bda01g02217 Bda11g01274 Bpe13g00499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01274 . . . Bma06g00614 . . . . Cma05g00020 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007540 2 1 0 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 2 2 36