Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02221 ATGGCAAACGGAAGCGAGGATGGGGTTCATCATTTATCCGCCGTCCTCTCCTCTCCGGACAGAGATTTTCTCCTCAACAACAATGGTGATCAGGTTATAATCAGTTCCTTGGTCGGGAAAAACGTCGGTCTGTATTTCTCTGCCTCGTGGTGTCCTCCGTGTCGCCGTTTCACCCCGACCTTAATTGATGTCTACGAAGATTTGGCGTCAAAAGGTGATTTCGAAGTGGTTTTCATCACCTCCGATCGCGACAATGAATCATTCGATAATTACTTCTCCAAAATGCCATGGCTGGCGATTCCATTTTTCGATTCAGAGACCAGAAAGCGGCTCAGGGAGCTCTTTGATGTGAAGGGCATTCCTTGCCTCGTCGTTCTTGATTCTGATGGTAGGGTTTCGACCGGTGAAGGGGTGAGAATCGTTGAGGAATATGGAGTCGAGGCTTATCCGTTCACCCCTGAATCGATCAATTCCTTGATCCAATGGGATGAGTTTGCTAAGAACAATCAAACCTTGAGCTCGCTCTTGGTTTCCTCCTCGCGTAATTACGTGATTTCCAATGACGGGAGTCAGATTCTGGTATCTGAGCTCGAAGGGAAGATGGTCGGACTGTTCTTTGCCATACATGGTCATAAAACATCCGTCGAGTTTTCTGCAAATCTAGCGAAGATCTACGATACCCTTAAAGGGAAAGGAGAAAATTTAGAGATTGTGTTCATACCTTTGCATTACGAAGAAGAACAGTTCGAAGAATTCTTCGCGTCAATGCCATGGCTATCCTTGCCATGCAAGGACAAAAGCTCTAATAAACTTGCTCGTTTCTTCGACCTTCAACGCTTTCCTACATTGGTCATTCTTGGCCCAGATGGAAAGACTTTAAACCCTGACGTTTCTCGTCTCGTCGAAGAATATGGTATTTACGCCTACCCATTTTCACCGGAGAAACTCGTTGAATTTGCTGAGATTGAGAAAGCTAAGCGAGAAGCTCAAACTCTAGAGTCTGTCTTAGTTTCTGGAGGACAGAAACTTTGTGATCGGGAAAGACGATTCTTGTGTCCTGAACTGGTCGGAAAGAGCATTCTGATCTATTTCTCATCACATTGGTGTCCTCGTTGTCGTGCATTCCTGCCGAAGCTCATCGATGCGTATCATCAGATAAAAGAAAAAGACGATTCCTTCGAAGTTATTTTCGTTTCGAGCGATCCCGATCAACCCTCTTTTGAAGAGTTCTTTGCGACCATGCCTTGGTTAGCCTTACCCTTTAGCGATGAACGGAAATCATTTCTCGGTAGATATTTCAAAATCAACGCCATTCCCGCAGCTGTGGTGATCGGTCCGAGCGGGAAGACAATCTCTACGGAAGCTCGGAAGCTGATAGAAGCTCACGGATCGAATGCTTATCCATTCAGTGAAAATCATGTGAGGCAGGTGGAGGAGGAGCTGGAGGAGAAAGCAAAGGGATGGCCGGAGAAGATCAAGCACGAACTTCATGAAGAGCACGAACTGGTTCGAGTCCGGGTAGATGAATATGTGTGTGATGCATGTGATGAAACGGGATCTTTATGGTCATTTTGCTGTAGTGAGTGTGATTTCGGTCTTCACCCGCACTGTGCATTGAAGAAAGTTGATGAAGAAGACGATGTCGAGAAGGCTGAGGGATGGATTTGCGACGGAGACGTATGCCGGAAAGCTTGA 1695 46.25 MANGSEDGVHHLSAVLSSPDRDFLLNNNGDQVIISSLVGKNVGLYFSASWCPPCRRFTPTLIDVYEDLASKGDFEVVFITSDRDNESFDNYFSKMPWLAIPFFDSETRKRLRELFDVKGIPCLVVLDSDGRVSTGEGVRIVEEYGVEAYPFTPESINSLIQWDEFAKNNQTLSSLLVSSSRNYVISNDGSQILVSELEGKMVGLFFAIHGHKTSVEFSANLAKIYDTLKGKGENLEIVFIPLHYEEEQFEEFFASMPWLSLPCKDKSSNKLARFFDLQRFPTLVILGPDGKTLNPDVSRLVEEYGIYAYPFSPEKLVEFAEIEKAKREAQTLESVLVSGGQKLCDRERRFLCPELVGKSILIYFSSHWCPRCRAFLPKLIDAYHQIKEKDDSFEVIFVSSDPDQPSFEEFFATMPWLALPFSDERKSFLGRYFKINAIPAAVVIGPSGKTISTEARKLIEAHGSNAYPFSENHVRQVEEELEEKAKGWPEKIKHELHEEHELVRVRVDEYVCDACDETGSLWSFCCSECDFGLHPHCALKKVDEEDDVEKAEGWICDGDVCRKA 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58042241 58044267 - Bda004561.1 Bda01g02221 2221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02221 564 ProSiteProfiles Thioredoxin domain profile. 321 482 IPR013766 -
Bda01g02221 564 Pfam Thioredoxin-like 357 449 IPR012336 -
Bda01g02221 564 Pfam Thioredoxin-like 199 291 IPR012336 -
Bda01g02221 564 Pfam Thioredoxin-like 40 132 IPR012336 -
Bda01g02221 564 SUPERFAMILY Thioredoxin-like 184 293 IPR036249 -
Bda01g02221 564 PANTHER NUCLEOREDOXIN 1-2-RELATED 6 539 - -
Bda01g02221 564 Gene3D Glutaredoxin 175 312 - -
Bda01g02221 564 Gene3D Glutaredoxin 344 470 - -
Bda01g02221 564 Gene3D Glutaredoxin 16 152 - -
Bda01g02221 564 ProSiteProfiles Thioredoxin domain profile. 12 146 IPR013766 -
Bda01g02221 564 CDD TryX_like_TryX_NRX 22 151 IPR045870 GO:0004791
Bda01g02221 564 PANTHER THIOREDOXIN 6 539 - -
Bda01g02221 564 SUPERFAMILY Thioredoxin-like 24 133 IPR036249 -
Bda01g02221 564 SUPERFAMILY Cysteine-rich domain 486 539 IPR046349 -
Bda01g02221 564 SUPERFAMILY Thioredoxin-like 353 452 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02221 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - mnt:21410370 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02221 Bda-Chr1:58042241 Bda03g01373 Bda-Chr3:49776027 1.83E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g687 Blo01g00395 . Bda01g02221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001026 1 2 1 1 0 4 3 3 2 3 3 3 3 3 3 3 3 2 2 4 3 3 2 3 3 3 4 3 3 5 81