Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02223 ATGCCTATGAATTCTGGCTTGAAACCCACCGGCGAACACAGGAACTCGCTCTTACAGGTAACCGACATCGTTCCAGCGGAGCTGGATGAGAAAAGCCTCTGGCCGAAACATGGATTCTACATCAAAGTATCCGATTCTTCCCACTCGATATACGCGAGTCTTCCTTCTGATCAAGACGATTTTGTTTTGAGTAATAAAATTCAGCTCGGCCAGTTCATTTACGTTGATAGATTGGAAACGGGATCGCCAGTTCCGGTCGTTAAAGGTGCCAAACCTCTCCCCGGACGGCACCCTGTTGTCGGAACACCGGAACCTATTATGGGTCTACGAGAAAGAGGAGAGAAAGTGGACCATAAGTCAGTCGGAAAGTTTTCTGCTCCGAGAAGGGGTTCTTGGGGAGGAAAAAATAGAGCGGACGGATTATCTTCGCCGATGGTCTTGAAGCCAGTTCCTTTGAATTTTGACCAGTGTACGCCGGCGAAGGAGATTCCCAATTTAACCTCTGCAAGAAATCAGAATATATTTCCGGCGACTCCCTCCACAAGAGGGAAAGCCGGAAAGGACGGGAGCAGCGGCGGAGGGATTCGATGTTCTTTCGGCGGTGGAATGCTGTCCAAAATGGCTGATACGAAAGGAGAAACGCCATCTCTGTTGAGAACAAGCTGCGTTGCTTCGTCTTCTTCAAAATTCACACGGAATAGAAGTGTTGGCGAAGGAGAGACGAAGATCTCGATGAGCTCTTTCAAGTCAGCTGTAGGAAAAGAAGAACTCCACTCCACCAAGAATTTCATCTAA 795 48.3 MPMNSGLKPTGEHRNSLLQVTDIVPAELDEKSLWPKHGFYIKVSDSSHSIYASLPSDQDDFVLSNKIQLGQFIYVDRLETGSPVPVVKGAKPLPGRHPVVGTPEPIMGLRERGEKVDHKSVGKFSAPRRGSWGGKNRADGLSSPMVLKPVPLNFDQCTPAKEIPNLTSARNQNIFPATPSTRGKAGKDGSSGGGIRCSFGGGMLSKMADTKGETPSLLRTSCVASSSSKFTRNRSVGEGETKISMSSFKSAVGKEELHSTKNFI 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58061427 58062330 + Bda004563.2 Bda01g02223 2223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02223 264 PANTHER OS01G0108800 PROTEIN 3 255 - -
Bda01g02223 264 MobiDBLite consensus disorder prediction 172 193 - -
Bda01g02223 264 Pfam Plant protein of unknown function (DUF936) 3 144 IPR010341 -
Bda01g02223 264 MobiDBLite consensus disorder prediction 113 137 - -
Bda01g02223 264 PANTHER EXPRESSED PROTEIN 3 255 IPR010341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02223 - - - pvy:116123053 350.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02223 Bda-Chr1:58061427 Bda13g00251 Bda-Chr13:3183575 1.24E-39 dispersed
Bda01g02223 Bda-Chr1:58061427 Bda10g01022 Bda-Chr10:44356226 5.43E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g722 Blo01g00397 . Bda01g02223 . . Bpe10g00837 . Bma15g00187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00875 . . . . . Bma01g00051 . . . . . Cma05g00006 . Car05g00005 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024614 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2