Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02224 ATGCAGCTGATGGAACTAAAAAGGAGGTTGCAGATTTTATTCACTCTGGATGATGGGCTGGTCATAGAAACTGTCATCATACCATGTGAGAGAGGCAGGACCACTGTTTGTGTTTCAAGTCAAGTGGGTTGTGCCATGAACTGTCAATTTTGCTTCACCGGCAGGATGGGCTTGACGAGACATCTTACTGTTGCTGAGATTGTAGAGCAGGCTGTCTTTGCAAGGCGATTACTCACGAGTGAAGTTGGTTCCATTACCAACGTTGTTTTCATGGGGATGGGAGAACCACTTCATAACATTGACAATGTCATTAAAGCTGCGGACATAATGGTGCACGACCAAGGACTCTATTTCAGTCCTCGCAAAGTCACTGTTTCAACAAGCGGGCTCGTCCCCCAGCTGAAACGTTTCCTGCATGAAAGTAATTGTGCTTTAGCTGTTAGTTTGAACGCGACAACCGATGAGGTTAGAAACTGGATAATGCCAATAAATCGGAAGTATAAGTTAGGTTTACTGCTTCAGACCCTACGAGAAGAACTGCGCTTCAAACATAACTACAAAGTTCTATTTGAATATGTGATGCTTGCCGGGATAAATGACAGCGAAGACGATGCAAAGAGGCTTGTCGAACTTGTTCGGGATATTCCTTGCAAGATTAATCTCATCTCCTTCAACCCTCATAGTGGATCTCAATTTAGACCCACAAGTGAGGAGAAAATGATCGAATTTCGGAATCTTTTGGCGGAAGGAGGGTGCAATGTCTTCTTAAGGCCGAGTAGAGGTGATGATCAAATGGCTGCTGTGGTCAGCTCGGCAAGCCTGGTACTGTCCAAGCGCCACTACTCCGTGTGCCTGAGCAATTTCGAATGGCCATGGAAGCATAGAAAGATACTTTTATTAGGCTGA 906 45.03 MQLMELKRRLQILFTLDDGLVIETVIIPCERGRTTVCVSSQVGCAMNCQFCFTGRMGLTRHLTVAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVHDQGLYFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRFKHNYKVLFEYVMLAGINDSEDDAKRLVELVRDIPCKINLISFNPHSGSQFRPTSEEKMIEFRNLLAEGGCNVFLRPSRGDDQMAAVVSSASLVLSKRHYSVCLSNFEWPWKHRKILLLG 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58064787 58066606 + Bda004564.1 Bda01g02224 2224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02224 301 SFLD Radical SAM 39 207 IPR007197 GO:0003824|GO:0051536
Bda01g02224 301 PANTHER 23S RRNA METHYLTRANSFERASE 11 267 IPR040072 -
Bda01g02224 301 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 11 267 - -
Bda01g02224 301 PIRSF Cfr 6 271 IPR004383 GO:0006364|GO:0008173
Bda01g02224 301 ProSiteProfiles Radical SAM core domain profile. 30 257 IPR007197 GO:0003824|GO:0051536
Bda01g02224 301 Pfam 4Fe-4S single cluster domain 43 146 - -
Bda01g02224 301 Gene3D Aldolase class I 4 268 IPR013785 -
Bda01g02224 301 CDD Radical_SAM 43 243 - -
Bda01g02224 301 SUPERFAMILY Radical SAM enzymes 33 249 - -
Bda01g02224 301 Pfam Radical SAM superfamily 39 204 IPR007197 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02224 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] - qsu:112022590 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02224 Bda-Chr1:58064787 Bda04g01228 Bda-Chr4:62895152 2.29E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g724 . . Bda01g02224 . Bpe13g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0658 . . . . . . . . . . . Bma01g00052 . . . . . Cma05g00005 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011256 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 28