Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02226 ATGGCGGCAGAGAATTGCAGCGCCGCGACTTTTCCTACCAACCCCCAGAGGGAGGAAGAAGATAATGGCGTCTCTGCTTCGATTACATCTCTGGATAACAAAGAGATTGATTCTATTTCCTCTGTCATTCCTGGGTGGTTCTCCGAGATTAGCCCCATGTGGCCAGCAGGAGAGGCGCACTCCTTGAAGATAGACAAGATTTTATTTGAAGGGAAGTCTAAGTACCAGAATGTGGTCGTCTTTCAGTCGTCAACTTATGGAAAGGTTCTGGTTTTGGATGGAGTGATTCAGCTCACTGAGCGAGATGAATGTGCTTACCAAGAAATGATCGCTCACTTGCCGCTTTGCTCCATTCCAAACCCGAGAAAGGTTTTGGTCATTGGCGGAGGCGATGGTGGGGTTCTTCGAGAAGTTGCTCGCCATGTTTCAAAACAGTTTTTCCCAGATGTAGCAGTCGGATACGACGATCCTCGGGTCAAACTTCACATCGGAGTTGCATTTTTGAGGGCTGTCCCAGAAGGAACTTACGATGCGATTATAGTTGATTCTTCTGATCCGATCGGTCCTGCACAAGAGCTTTTCGAGAAGCCTTTTTTTGAGTCGGTGGCAAAGGCTTTACGACCGGGAGGAGCCGTGTGCACTCAAGCTGAAAGTATATGGCTTCACATGCACATAATCGAGGAAATCGTGGCGAATTGCCGTCAAGTCGGCGTTATCGGTTTCATGCTCTGTTCGACCGAGGGGCCGGCTGTTGATTTCACGCACCCCGATATTTGGATAGAGGGAGTCGATACTGAGAACAACCTGAGAGGGCCCTTGAAATTTTACAATTCTGAGATTCACAAGGCAGCTTTCTGTTTGCCATCTTTTGCCAAAAGGGTTATTGATTCAAATGCAAAGTAA 903 47.73 MAAENCSAATFPTNPQREEEDNGVSASITSLDNKEIDSISSVIPGWFSEISPMWPAGEAHSLKIDKILFEGKSKYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPRKVLVIGGGDGGVLREVARHVSKQFFPDVAVGYDDPRVKLHIGVAFLRAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGAVCTQAESIWLHMHIIEEIVANCRQVGVIGFMLCSTEGPAVDFTHPDIWIEGVDTENNLRGPLKFYNSEIHKAAFCLPSFAKRVIDSNAK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58082203 58084675 + Bda004566.1 Bda01g02226 2226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02226 300 MobiDBLite consensus disorder prediction 7 25 - -
Bda01g02226 300 MobiDBLite consensus disorder prediction 1 25 - -
Bda01g02226 300 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 124 137 IPR030373 -
Bda01g02226 300 Pfam Spermine/spermidine synthase domain 103 243 - -
Bda01g02226 300 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 266 IPR030374 -
Bda01g02226 300 PANTHER SPERMIDINE SYNTHASE-RELATED 2 299 - -
Bda01g02226 300 CDD AdoMet_MTases 123 215 - -
Bda01g02226 300 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 296 IPR029063 -
Bda01g02226 300 Pfam Spermidine synthase tetramerisation domain 45 100 IPR035246 -
Bda01g02226 300 Hamap Polyamine aminopropyltransferase [speE]. 45 296 IPR001045 GO:0003824
Bda01g02226 300 PANTHER SPERMIDINE/SPERMINE SYNTHASE 2 299 IPR001045 GO:0003824
Bda01g02226 300 Gene3D Vaccinia Virus protein VP39 98 300 IPR029063 -
Bda01g02226 300 Gene3D Spermidine synthase, tetramerisation domain 38 97 IPR037163 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02226 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - zju:107428628 446.432
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02226 Bda07g01594 CCT
Bda01g02226 Bda07g01594 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02226 Bda-Chr1:58082203 Bda07g01594 Bda-Chr7:29583406 9.45E-160 dispersed
Bda01g02226 Bda-Chr1:58082203 Bda10g01018 Bda-Chr10:44342228 2.63E-163 wgd
Bda01g02226 Bda-Chr1:58082203 Bda06g00587 Bda-Chr6:8115044 5.35E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106