Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02229 ATGGGCTTTATTTGGGCTGGCAGGGCTTTGAATTTATTTTATAAAACCCTAAATCTCGAAAGAACGAGGCCTTCACAGACTGCGAAGCCCAAGCCGAAGGAGATCGTACATGTTATTGTGCTCTCGAATCAGGAGGAGCTCTCGCTTTCCGATTTCTCCGTCGCCAGCTCCTCCGCCTCTACCTTCATTTCTCCGCTGCTCCCTTCTGAAGCATCTCTCCGCCGTTTTTGCTCCTCTTTTCCGCCCTCGGTGGCTACGATGGCGGCCGGGAATTTCAAAGATGAGGACTACCTCAAAGTTATAGTTCCTAAGCGCATTCAACTCTTTGAGTCCATCAAAGCTCAGCAGCTTGCTCATCGTCAGTCACTCCCTTCGCATTCATCAAGTATGCCTGATTACTATTTGCCGGACGGAACGGTGAAGGAAGGTAAGAAGTGGCAAACAACTCCATTTGATATTGCGAAGGAACTTTCAAAAAGTTTGGCGGCAAACGCTCTGATTTCTCAAGTGGACGGAGTTTTATGGGACATGAATAGGCCGCTAGAGAGTGACTGCGAGCTAAAGATTTTCAGTTTCAATACCGACGAAGGGAGTGATACGTTTTGGCATTCTAGTGCTCATATACTTGGACAGTCACTAGAGATGGAATACGGCTGCAAACTTTGCATTGGACCTTGCACCACTAGAGGAGAGGGGTTCTATTATGATGCATTTTACGGTGATTTAGGCTTGAACGATGACCATTTCAAAAAGATTGAGGCGGGGGCACTAAAGGCTGTTGCGGAGAAACAGCCATTTGAGCGCATTGAAGTATCAAAGCAACAGGCATTTGAGATGTTTTCAGAAAATAATTTTAAGGCAATTTTTGGGTCCTACATTTTGACTATTTATCAGGTTGAGATTATCAAAGATTTGCCAGAAGACAAGACTATAACAGTATATAGATGTGGCCCTCTAGTTGATTTATGTCGTGGCCCCCACATACCAAACACATCCTTCGTGAAGGCAATTGCATGTCTGAAGGCTTCATCAGCCTATTGGAGGGGAAATAAAGACCGCGAAAGCTTACAAAGAGTTTATGGTATATCTTATCCTGATCAAAAAAGTTTGAAGGAATATCTTAATATGTTGGAAGAAGCCAAGAAGTATGACCATCGGTTGTTGGGTACAAAACAAGAGCTTTTCTTTTGCCACCCACTTAGCCCAGGAAGTTGGTTCTTTCTCCCTCACGGGGCTAGGATCTACAACAAACTGATGGAGTTTATACGGGCTCAATACAGAGATAGAGGTTATGAAGAGGTTTTATCTCCAAATATGTACAACATGCAACTTTGGGAAACATCCGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTATTTGAGATTGAAAAGCAAGAATTTGGATTGAAACCAATGAATTGTCCTGGGCACTGTTTGATGTTCCAACATAGAGTTCGCTCATACAGGGAACTTCCTCTTCGATTGGCTGATTTTGGAGTGTTGCATCGTAATGAGGCCAGTGGTGCTCTGACTGGACTTACCCGTGTGCGGAGGTTTCAACAGGATGATGCTCATATCTTCTGCTCAAAGTCTCAGATAAAAGATGAAGTGAGGGGCGTCTTAGAGTTCATCAAATATATCTACAACGTTTTTGGGTTCACCTTTGATCTGAAGTTATCAACGAGACCTGAAAAATTTCTTGGAGACATAGCTACATGGGAGGAAGCTGAAGCAGCACTTACAGAAGCATTAAATGAATTAGGGAAACCCTGGCAGATCAACGAAGGGGATGGTGCATTTTATGGGCCAAAGATAGATATTAGCGTATCTGACGCACTGAAAAGGAAATTTCAATGTGCCACGCTCCAGTTGGACTTCCAGCTTCCTAAGCGATTTGAATTATATTACTCTACAGAGGATGAAGCGAAGAGAGAGATGCCCGTAATGATACATAGAGCCATTTTGGGGTCTGTAGAGCGGATGTTTGCTATTCTATTGGAGCATTATAAGGGGAAATGGCCTTTCTGGCTCAGTCCACGGCAAGCCATTGTTTGTCCAGTGTCAGAAAAATCCCAGTCCTATGCACTTAAGGTAGTGCGCGATCAAATTCATCATGCCGGTTATTATGTTGATGTGGATACGACTGATAGGAAGATCCAAAAGAAGGTGCGTGAAGCCCAGTTGGCGCAGTACAACTTTATTTTGGTTGTTGGAGAGGAAGAGGCCAACACTGGACAGGTGAGTGTTCGAGTGAGAGACAAAGCCGATCACAATGTAATAAGCATCGAGAGCTTAGTCAAACACTTCGAGGAAGAAATTGCAGCTTTTCATTAA 2337 43.73 MGFIWAGRALNLFYKTLNLERTRPSQTAKPKPKEIVHVIVLSNQEELSLSDFSVASSSASTFISPLLPSEASLRRFCSSFPPSVATMAAGNFKDEDYLKVIVPKRIQLFESIKAQQLAHRQSLPSHSSSMPDYYLPDGTVKEGKKWQTTPFDIAKELSKSLAANALISQVDGVLWDMNRPLESDCELKIFSFNTDEGSDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKKIEAGALKAVAEKQPFERIEVSKQQAFEMFSENNFKAIFGSYILTIYQVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRESLQRVYGISYPDQKSLKEYLNMLEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGARIYNKLMEFIRAQYRDRGYEEVLSPNMYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCSKSQIKDEVRGVLEFIKYIYNVFGFTFDLKLSTRPEKFLGDIATWEEAEAALTEALNELGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPKRFELYYSTEDEAKREMPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALKVVRDQIHHAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEANTGQVSVRVRDKADHNVISIESLVKHFEEEIAAFH 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58100675 58112932 + Bda004569.1 Bda01g02229 2229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02229 778 SUPERFAMILY Class II aaRS and biotin synthetases 384 667 IPR045864 -
Bda01g02229 778 PRINTS Threonyl-tRNA synthetase signature 648 661 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 PRINTS Threonyl-tRNA synthetase signature 503 526 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 PRINTS Threonyl-tRNA synthetase signature 675 687 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 PRINTS Threonyl-tRNA synthetase signature 470 498 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 PRINTS Threonyl-tRNA synthetase signature 604 632 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 SMART tRNA_SAD_4 311 360 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bda01g02229 778 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 461 670 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda01g02229 778 Pfam TGS domain 134 190 IPR004095 -
Bda01g02229 778 Gene3D - 674 777 IPR036621 -
Bda01g02229 778 Gene3D - 194 364 - -
Bda01g02229 778 Gene3D - 134 190 IPR012675 -
Bda01g02229 778 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 311 360 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bda01g02229 778 Hamap Threonine--tRNA ligase [thrS]. 196 776 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 Gene3D Bira Bifunctional Protein; Domain 2 366 673 IPR045864 -
Bda01g02229 778 SUPERFAMILY ThrRS/AlaRS common domain 195 382 IPR018163 GO:0000166
Bda01g02229 778 SUPERFAMILY Class II aaRS ABD-related 668 774 - -
Bda01g02229 778 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 372 675 IPR006195 -
Bda01g02229 778 ProSiteProfiles TGS domain profile. 129 191 IPR004095 -
Bda01g02229 778 PANTHER THREONINE-TRNA LIGASE 89 777 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 SUPERFAMILY TGS-like 134 191 IPR012676 -
Bda01g02229 778 CDD ThrRS_anticodon 680 771 - -
Bda01g02229 778 CDD ThrRS_core 384 680 IPR033728 -
Bda01g02229 778 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 89 777 - -
Bda01g02229 778 TIGRFAM thrS: threonine--tRNA ligase 202 773 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bda01g02229 778 Pfam Anticodon binding domain 682 772 IPR004154 -
Bda01g02229 778 CDD TGS_ThrRS 135 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02229 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 1229.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02229 Bda11g01256 CCT
Bda01g02229 Bda11g01256 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02229 Bda-Chr1:58100675 Bda13g00777 Bda-Chr13:9290743 2.49E-152 dispersed
Bda01g02229 Bda-Chr1:58100675 Bda11g01256 Bda-Chr11:13180439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46