Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02234 ATGTCCGTCTCGTGCTTTGATTGCTTCTCCGACCTACTCTGCGACGAAGACTCGTCTGAAATATTGTCAGAAGAGTCGCCAGGAAGCTCGTCGGAACTCGAATCTACGGCGTCACTCGAGGAATCGATCGCCGGATTCATTGAAGGCGAGAGACAGCTCGTACCAGAGGGCGACTATTTTTTGGGTTTTCAATTGAAGTCGATGGACGCTTCTGCAAGGGCCGAGTCTGTTGCATGGATTCTCAAGGTTCAAGACTGTTATGGGTTTCAACCATTGACGGCGTACCTCTCCGTCAACTACTTGGATCGGTTCCTTCATTCTCGCCGATTGCCGCAAGCAAATGGGTGGCCAATACAACTCCTCTCTGTTGCTTGCTTGTCACTAGCGGCTAAGATCGAGGAAACAACGGTTCCCTCTTTACTGGATCTTCAGGTTGAAGGAGCTAAATACATATTCGAATCGAAAACAGTATTTCGAATGGAGCTTCTCGTGCTGAGCGTTTTAGATTGGCGATTACGATCCATAACACCGTTCAGCTTCATCGGTTTCTTCGCATGCAAGCTCGACCCGACCGGAACTTTTACTGGTTTTCTAGTCTCCCGAGCTGGAGATATTATTCTATCGAGTATCCGAGAAGCTAGCTTTCTCGTCCACCGGCCGTCGTGCATAGCTGTTGCAGCTTTACTTTGTGCGGCAAATGAAATCCCAAGCTTGTCACTCGCAAATCCTGGAGAAGCTGAAATGTGGTGCAAAGGGCTAAGCAAAGAGAAAATCATTTGCTGCTACCGACTAGTGCAAGAATCAATAGGCCGCAGCCACCGGAGATCGACACGGCCGAAGATTTTACCTCAGCCACGAGTGACAACGATTTGTACAAGACGGAGGTCCAGCGATTCATCATTATCGTCCTTGTCATCACCTCAAAAAAGGAGAAGATTAAACAACTGCTAA 951 48.26 MSVSCFDCFSDLLCDEDSSEILSEESPGSSSELESTASLEESIAGFIEGERQLVPEGDYFLGFQLKSMDASARAESVAWILKVQDCYGFQPLTAYLSVNYLDRFLHSRRLPQANGWPIQLLSVACLSLAAKIEETTVPSLLDLQVEGAKYIFESKTVFRMELLVLSVLDWRLRSITPFSFIGFFACKLDPTGTFTGFLVSRAGDIILSSIREASFLVHRPSCIAVAALLCAANEIPSLSLANPGEAEMWCKGLSKEKIICCYRLVQESIGRSHRRSTRPKILPQPRVTTICTRRRSSDSSLSSLSSPQKRRRLNNC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58166437 58168382 - Bda004579.1 Bda01g02234 2234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02234 316 PANTHER CYCLIN-D1-1 3 312 - -
Bda01g02234 316 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Bda01g02234 316 Pfam Cyclin, C-terminal domain 175 276 IPR004367 -
Bda01g02234 316 SUPERFAMILY Cyclin-like 39 172 IPR036915 -
Bda01g02234 316 SMART Cyclin_C_2 175 293 IPR004367 -
Bda01g02234 316 CDD CYCLIN 73 165 IPR013763 -
Bda01g02234 316 Pfam Cyclin, N-terminal domain 46 172 IPR006671 -
Bda01g02234 316 SMART cyclin_7 78 166 IPR013763 -
Bda01g02234 316 MobiDBLite consensus disorder prediction 293 316 - -
Bda01g02234 316 Gene3D - 48 236 - -
Bda01g02234 316 Gene3D - 56 173 - -
Bda01g02234 316 PANTHER CYCLINS 3 312 IPR039361 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02234 Bda07g01568 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00214 Bda-Chr1:25499121 Bda01g02234 Bda-Chr1:58166437 6.87E-28 dispersed
Bda01g02234 Bda-Chr1:58166437 Bda07g01568 Bda-Chr7:29111521 1.67E-133 dispersed
Bda03g00183 Bda-Chr3:1497346 Bda01g02234 Bda-Chr1:58166437 1.74E-39 dispersed
Bda04g00014 Bda-Chr4:157909 Bda01g02234 Bda-Chr1:58166437 1.87E-42 dispersed
Bda15g00846 Bda-Chr15:12997850 Bda01g02234 Bda-Chr1:58166437 1.34E-44 dispersed
Bda01g02234 Bda-Chr1:58166437 Bda11g01253 Bda-Chr11:13122638 1.09E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02234 K18810 - cit:102622171 382.489