Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02239 ATGGGATTCGGATTCTGTTTTAACCTTTCCATTTTACTGTGCCTTTCAGTGTTGGCAACTCCGATTTCTGCTGAGTTTTTCTCTGATGCGTCGTCGATTGCGCCATGGATGAACTCTACCTCTAGATCATGGAAAGAGTTCAAAAAACTTGCAGGTTGTCATGCTGGGGAGAAACTCGATGGCTTGTCCAAGCTCAAGCAGTATTTCCAGCATTTCGGATATCTTCCTGAATCGGGTTTCAATTTCACCGATGAGTTTGACAAGAATTTTGAATCAGCGGTCAGAACTTACCAGAAAAACTTCAATCTCAACGTCACCGGCGAGCTAGATGTACTGACCCTAAAGCAAGTTCAAAGGCCGAGATGCGGTGTCGCCGATATAATCAACGGTTCAACATCAATGAATTCAGGGAAGCCGTCCCACTTCAAAGGATCACACTTTCATACCGTTTCTCACTATTCTTTCTTCCCCGGAACTCCTAGATGGCCAGAAAGTAAGCAGGATTTAACTTATGCTTTCTTGCCGGATAACCAACTTCCCGACGACGTGAAGAGCGTATTCGCGCGCGCTTTCTCTCGGTGGTCCGCCGTTACTCCCTTGACGTTTACAGCAACAGAAACATTCAACTCGGCCGACATTAAAATCGGATTCTTCACCGGCGACCATGGAGACGGAGAACCGTTCGACGGAGTGCTAGGGACTCTGGCCCACGCATTCTCGCCTCCTAGTGGACGGTTCCACTTAGACAGAGACGAAAACTGGGTGATCTCCGGGGACATAAGAACAGCTTCATTGAACTCGTCGGCCATAGATCTCGAGTCCGTGGCGGTGCACGAGATCGGGCACTTGCTCGGACTGGGCCACTCGTCGGTAGAGGAAGCGATTATGTACCCGACGATCTCGTCGAGAACGCGAAAGATCGAGCTCAACGCCGACGACATAAACGGAATTCAAGAATTATACGGGTCGAATCCAAATGGAACCAGTTCCTCAACGAGGACGTCCACGCAAGAGAGAGACACCAGCGGTGGCGCCCACAGTCTGACTCCATGGTGGGGCCTCTGCCTCATCTTGGCCGTAGAACTTTTGCTACTAAGCCATATGATCTTGTAA 1113 49.6 MGFGFCFNLSILLCLSVLATPISAEFFSDASSIAPWMNSTSRSWKEFKKLAGCHAGEKLDGLSKLKQYFQHFGYLPESGFNFTDEFDKNFESAVRTYQKNFNLNVTGELDVLTLKQVQRPRCGVADIINGSTSMNSGKPSHFKGSHFHTVSHYSFFPGTPRWPESKQDLTYAFLPDNQLPDDVKSVFARAFSRWSAVTPLTFTATETFNSADIKIGFFTGDHGDGEPFDGVLGTLAHAFSPPSGRFHLDRDENWVISGDIRTASLNSSAIDLESVAVHEIGHLLGLGHSSVEEAIMYPTISSRTRKIELNADDINGIQELYGSNPNGTSSSTRTSTQERDTSGGAHSLTPWWGLCLILAVELLLLSHMIL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58214412 58215524 - Bda004585.1 Bda01g02239 2239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02239 370 PRINTS Matrixin signature 187 202 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bda01g02239 370 PRINTS Matrixin signature 211 239 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bda01g02239 370 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bda01g02239 370 PRINTS Matrixin signature 275 300 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bda01g02239 370 PRINTS Matrixin signature 309 322 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bda01g02239 370 SUPERFAMILY PGBD-like 53 127 IPR036365 -
Bda01g02239 370 Pfam Matrixin 162 322 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bda01g02239 370 Gene3D Collagenase (Catalytic Domain) 50 328 IPR024079 GO:0008237
Bda01g02239 370 MobiDBLite consensus disorder prediction 318 344 - -
Bda01g02239 370 PANTHER MATRIX METALLOPROTEINASE 8 363 - -
Bda01g02239 370 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 155 326 - -
Bda01g02239 370 SMART col_5 158 323 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bda01g02239 370 CDD ZnMc_MMP 161 322 IPR033739 GO:0008237|GO:0008270
Bda01g02239 370 MobiDBLite consensus disorder prediction 318 345 - -
Bda01g02239 370 PANTHER MATRIX METALLOPROTEINASE 8 363 - -
Bda01g02239 370 Pfam Putative peptidoglycan binding domain 62 116 IPR002477 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02239 - - - zju:107419892 465.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02239 Bda11g01250 CCT
Bda01g02239 Bda11g01250 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02239 Bda-Chr1:58214412 Bda07g00040 Bda-Chr7:701477 2.40E-99 dispersed
Bda05g00510 Bda-Chr5:52143747 Bda01g02239 Bda-Chr1:58214412 1.13E-71 transposed
Bda07g01652 Bda-Chr7:30755743 Bda01g02239 Bda-Chr1:58214412 5.36E-76 transposed
Bda14g00378 Bda-Chr14:2738972 Bda01g02239 Bda-Chr1:58214412 2.75E-75 transposed
Bda01g02239 Bda-Chr1:58214412 Bda11g01250 Bda-Chr11:13016236 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006919 2 1 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 36