Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02242 TCAATGTCTGTTTCTAGACGGTTGTCGGTCAGTCCTCCACATTCCGATGTGGCGTCGACTCATGAATTTAAGCAGAGAGTCATGGCTTGCCTCAATAAACTTGGCGATCGCGATACTCTTGCTGTCGCTACCAGTGAGCTAGAGGCTATTGCTAAAACCTTAACGTATGATTTCTTCTCGCCTTTTCTTTCTTGCATTCATAACACTGATGCTAGTTTGAAGTCGCCGGTTCGGAAACAATGTGTGAACCTATTGAGTGTTCTTTCTTACGCTCATGGCGATGCGTTATCTCCTTTCTTATGTAAGATGATTTCGACTGTTGTTCGTCGCCTCCGTGATCCTGATTCAGCCGTGAGATCTGCCTGCGTCGACGCTTCGGCGGCTATGTCCTCGCAAATCACGAAGCCTTCATTTTCGTATTTTTTGAAACCGTTTATGGAAACGCTTACGCTTGAGCAGGACCTCAACTCTCAGATCGGTTCCGCGCTGTGCCTCTCTGCGGCGGTGGAGGCTGCACCGGATCCGGAGGTTATGCAGTTGAGGAAGTGCTTGCCGAGGCTTGGAAAATTGGCTAGGAGCGAGGGGTTCAAAGCTAAAGCGGCGCTATTAGTTCTTATCGGCAGTATTGTTGGAGTAGGTGGCGCGTCCAGCCAGACCGTCTTGGACTGGTTGATACCTTGCCTGGTGGAGTCTTTGGGCAGTGATGATTGGGCTGTAAGGAAAGCGGCGGCTGAGGCACTTGGGAGGGTGGCTTTGACGGAGAGAGACTTAGCGGCTGATTATAAATCATCGTGCATTAGTTCTATGGAGAGTCGGAGATTTGATAAGATAAAGGTTGTCCGGGAGACTATGAATCAGACCTTGGACTCGTGGCGAGAGATTTCTAATGTTCTTGAGGAAATCTATCCAGCATCTCCACAGAAATCTCCTGCAATTGATGGTGGTTGTAAAGGCGGTGGATGCTTTCCTCATGTCTCCAAAACTTGTCATGAGATCAGTTCGAAAACTCCAGCGAAGAAAAATGTGCCCACAAATAAGCTCCCGCCATTAGCTACTCCCCTTTTGACTACTGCAAAAAAAGATAGTGCTTTGAAGAGCAGTGAGTGCAACTCAAGTAAATACATGACTTCTATGCTGGACCAAACGAAATTTTCTGAGTCGAAATTTGAAAATGGAAAATCAAACTCGCCTTCATCAAATGTGACTTTCGCAAAGGATATGAAAATGAGTGGCTGTGGAGATTTGGATTTTCGAGATGGTAGGGATGGTGGAAATTCCATTGTGGAAGAAAAATCTCTTCTTTTTAATCATCCCCGTGATGAAAAACCTAATAAATTTAGGAGTTGTTCTCGTGTAGTTCCATATATTGACAGTGAGGACCAAAACCCAGATGCTTTTGTTAGCAGCAGTGCTGATGAGGCGTTTGAGAACCAGAAAGATGTTGAGGATCTCTCTTTGATTCGTGATCAACTTCTACACATCGAAAATCAGCAATCCAATCTTCTAGACCTCCTGCAGCAGAGATTTATTGGGAGCTCACAAAATGGGATGAATTCTCTAGAGAAGCGAGTGCATGGACTAGAGATGGCAGTGGATGAAATATCTTACGACTTGGCTGTATCAAATGGAAAGATACCAAACAGCAATGTCTCTGGAAACAAATGTTGCAAGCTGCCAGGCGCAGAATTTCTTAGTTCCAAATTCTGGAAGAGAACGGAAGGGAGGTATTTTGGCTCAAGGTTTCATTCTACTGGCAACGAACAACCACCAAATTGTCTTCATCCCATGGCTGATAAAGACGCTAAAATGGAACCAAATATGCCAGAAAGCCGAAAGTTTCATTGTCGTAGTGGGAACAAGTTAGTCGTAAATCAATTGGCAGATGTCCAGGGCGACTCCAATGAAAATTTAGAGCGCTATTCAATGGGTATGCAGAAGACAACAGTCAAAGAAAATGAGGTTGTTAAAGGTGGCAGCGGCGTGGCCGTCACAGGGCATTACCAACTACATCAGAAACAAAAGTGA 2025 45.19 SMSVSRRLSVSPPHSDVASTHEFKQRVMACLNKLGDRDTLAVATSELEAIAKTLTYDFFSPFLSCIHNTDASLKSPVRKQCVNLLSVLSYAHGDALSPFLCKMISTVVRRLRDPDSAVRSACVDASAAMSSQITKPSFSYFLKPFMETLTLEQDLNSQIGSALCLSAAVEAAPDPEVMQLRKCLPRLGKLARSEGFKAKAALLVLIGSIVGVGGASSQTVLDWLIPCLVESLGSDDWAVRKAAAEALGRVALTERDLAADYKSSCISSMESRRFDKIKVVRETMNQTLDSWREISNVLEEIYPASPQKSPAIDGGCKGGGCFPHVSKTCHEISSKTPAKKNVPTNKLPPLATPLLTTAKKDSALKSSECNSSKYMTSMLDQTKFSESKFENGKSNSPSSNVTFAKDMKMSGCGDLDFRDGRDGGNSIVEEKSLLFNHPRDEKPNKFRSCSRVVPYIDSEDQNPDAFVSSSADEAFENQKDVEDLSLIRDQLLHIENQQSNLLDLLQQRFIGSSQNGMNSLEKRVHGLEMAVDEISYDLAVSNGKIPNSNVSGNKCCKLPGAEFLSSKFWKRTEGRYFGSRFHSTGNEQPPNCLHPMADKDAKMEPNMPESRKFHCRSGNKLVVNQLADVQGDSNENLERYSMGMQKTTVKENEVVKGGSGVAVTGHYQLHQKQK 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58240229 58243054 + Bda004588.1 Bda01g02242 2242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02242 674 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 8 653 - -
Bda01g02242 674 ProSiteProfiles HEAT repeat profile. 224 251 IPR021133 -
Bda01g02242 674 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 653 IPR033337 GO:0005874|GO:0008017
Bda01g02242 674 Pfam HEAT-like repeat 200 249 - -
Bda01g02242 674 SUPERFAMILY ARM repeat 42 296 IPR016024 -
Bda01g02242 674 Gene3D - 21 380 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02242 - - - qsu:111996814 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02242 Bda-Chr1:58240229 Bda09g00392 Bda-Chr9:4976018 9.36E-10 dispersed
Bda01g02242 Bda-Chr1:58240229 Bda06g00571 Bda-Chr6:7983216 7.12E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g803 Blo01g00409 Blo16g01141 Bda01g02242 . Bpe13g00475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00072 . . . . . . . . . Cpe07g00613 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005532 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40