Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02247 ATGGAGATGGATCCGCCTTCATTGATCAATGAAGAACCATATTCTGACCCAAATGCAGCACCATACAATCTGGCTGAGATCTGGCATTTTCAGATGAACGGCAATGCAGTTATTTCCGAATCCGGATTAGGCGAGAGGAGGGCTCAGTTCGTCCCCAATTTAGGCCAATTGGGGGAAGCTTCTGCGGTGAATCACGAACTCTCGGCCAATGCTTCGGCGAGAAAGGCACAAAATCATACGATGAAGCGACGGACTACGGAGGAGGACTCCCCCACTGGTCTCCCAGTCAGCAATGGCGTAGCAGTGAACGATGATAAGAAACGTCATAAAACAGGAGCATGCAGGGAGATGAATAGCGAATCAAAAACTGGAGGAGAGTTGCAGAATTCCCAGACGCCTAAGCAGGACTACATTCACGTTCGAGCAAGAAGGGGCCAAGCTACAGACAGCCATAGCTTAGCTGAAAGGGCTAGAAGAGAGAAGATAAGCGAGAGAATGAAAATTCTGCAGGATTTGGTTCCAGGCTGCAACAAGGTTATCGGAAAAGCTTTGGTGCTTGACGAGATTATCAACTACATTCAATCCTTACAGCGCCAAGTTGAGTTCTTGTCTATGAAGATTGAAGCAGTTGATTCAAGAATGAGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGCGAACAGACATTCGAAACCAATAGCGTAGCATTTGGCTGGCTCGGTTCGTCGCCTGAGTGA 741 47.64 MEMDPPSLINEEPYSDPNAAPYNLAEIWHFQMNGNAVISESGLGERRAQFVPNLGQLGEASAVNHELSANASARKAQNHTMKRRTTEEDSPTGLPVSNGVAVNDDKKRHKTGACREMNSESKTGGELQNSQTPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKIEAVDSRMSPGIEVFPPKDYGEQTFETNSVAFGWLGSSPE 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58264061 58265518 - Bda004592.1 Bda01g02247 2247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02247 246 MobiDBLite consensus disorder prediction 70 133 - -
Bda01g02247 246 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 239 IPR024097 GO:0006355
Bda01g02247 246 CDD bHLH_AtBPE_like 136 221 - -
Bda01g02247 246 PANTHER BNAC05G07950D PROTEIN 3 239 - -
Bda01g02247 246 SMART finulus 152 202 IPR011598 GO:0046983
Bda01g02247 246 Gene3D - 143 216 IPR036638 GO:0046983
Bda01g02247 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 214 IPR036638 GO:0046983
Bda01g02247 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Bda01g02247 246 MobiDBLite consensus disorder prediction 102 116 - -
Bda01g02247 246 Coils Coil 193 213 - -
Bda01g02247 246 MobiDBLite consensus disorder prediction 117 133 - -
Bda01g02247 246 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02247 Bda11g01242 CCT
Bda01g02247 Bda11g01242 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02247 Bda-Chr1:58264061 Bda01g02276 Bda-Chr1:59116207 2.09E-121 dispersed
Bda01g02247 Bda-Chr1:58264061 Bda11g01242 Bda-Chr11:12947673 4.97E-106 wgd
Bda01g02247 Bda-Chr1:58264061 Bda06g00566 Bda-Chr6:7945300 1.38E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15519 PF00010 HLH 1.80E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02247 - - csv:101209222 275.404