Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02253 ATGGGACAAGCACTTGGTTGTATTCAAGTAGACCAGTCAACTGTGGCAGTTAAAGAAACATTCGGGAAGTTTGATGATGTGCTTCAACCCGGATGTCATTGCGTGCCCTGGTGTTGTGGAAGCCAGTTAGCAGGTCACCTGACTTTACGTTTGCAACAACTTGATGTCCGTTGTGAAACAAAAACAAAGGATAATGTTTTTGTTACTGTGGTTGCTTCAATTCAATATCGAGCCTTACCAGAGAGGGCAGAAGATGCTTTTTATAAGCTCAGCAACACGAGAGAGCAGATCCAAGCATATGTTTTTGATGTTATTAGAGCAAGCGTGCCGAAGTTAGATTTGGATTCAACTTTTGAACAGAAAAATGATATAGCTAAAGCTGTGGAAGATGAACTCGAAAAGGTGCAGGCTATGTCAGCTTATGGGTTTGAGATAGTTCAGACTCTGATTGTCGACATTGAACCAGATGAGCGTGTGAAGAGAGCAATGAATGAAATAAACGCCGCTGCTAGACTGAGGGTCGCAGCAACTGAGAAAGCTGAAGCAGAGAAAATATTACAAATCAAGAGAGCAGAAGGAGATGCAGAGTCCAAATATCTAGCGGGGCTTGGTGTTGCCAGACAGCGTCAAGCCATCGTCGACGGGCTGAGAGACAGCGTTCTCGCCTTTTCTCACAATGTTCCTGGAACGTCGGCCAAAGACGTGATGGACATGGTTTTGGTGACCCAATATTTCGACACAATGAAGGAAATCGGTGCATCGTCGAAATCCAACTCGGTTTTCATACCGCACGGACCTGGGGCTGTGAGAGACATCGCATCACAGATTAGAGATGGTCTTCTCCAAGCAAATGACAACGACAACAACTAA 870 44.94 MGQALGCIQVDQSTVAVKETFGKFDDVLQPGCHCVPWCCGSQLAGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRALPERAEDAFYKLSNTREQIQAYVFDVIRASVPKLDLDSTFEQKNDIAKAVEDELEKVQAMSAYGFEIVQTLIVDIEPDERVKRAMNEINAAARLRVAATEKAEAEKILQIKRAEGDAESKYLAGLGVARQRQAIVDGLRDSVLAFSHNVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQANDNDNN 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58295805 58297270 + Bda004597.1 Bda01g02253 2253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02253 289 CDD SPFH_like_u4 10 280 - -
Bda01g02253 289 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1-LIKE 1 285 - -
Bda01g02253 289 Coils Coil 118 138 - -
Bda01g02253 289 Gene3D Band 7 domain 42 169 IPR036013 -
Bda01g02253 289 SMART PHB_4 5 167 IPR001107 -
Bda01g02253 289 Pfam SPFH domain / Band 7 family 9 184 IPR001107 -
Bda01g02253 289 SUPERFAMILY Band 7/SPFH domain 47 173 IPR036013 -
Bda01g02253 289 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02253 - - - csv:101206629 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02253 Bda-Chr1:58295805 Bda15g00593 Bda-Chr15:9129924 1.10E-178 dispersed
Bda01g02253 Bda-Chr1:58295805 Bda01g02261 Bda-Chr1:58526354 7.78E-108 proximal
Bda01g02253 Bda-Chr1:58295805 Bda06g00554 Bda-Chr6:7816288 1.06E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g852 Blo01g00417 Blo16g01133 Bda01g02253 . Bpe13g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0972 . . . . . . . . . . . . Bma01g00082 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84