Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g02254 | ATGAAAATGGCGGAATATGGATTTAAGAAAAGATTTTTTATGATTTCGGTTTTGTTGCTGTTGGGAGTGGTGGCCCACGCCAATATCGGAGAGTTTGATGATTACTGGAAACATCGAGAACAGGAAGCCAAGGCGGCGGCGCTTGACGCTTATGATCCTAACCCTGAAGCCGTCGCTGATAGCTTAAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACAGCACAAGAAGGAACCTGAAGAAGACGAAGGGTCCATGCAGGGGGACGAACCCCATCGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAATGACAGGAAGAAGCTAGCCACCTGCGTTCTGGGCTTCGGTCACCAGACCACCGGAGGAAAAGACGGCCGATTCTACGTCGTTACCGACGCCTCCGACTCGGACCTGATTAACCCTAAACCAGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACCCAAGAGCTGATGGTGAACAGCCACAAAACCATCGACGCAAGAGGAGCCGACGTACATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAACAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTGCCGGCACCGGCGGATTGATCAGAGATTCGGTCGACCACTATGGGTTTAGAACGAGGAGTGACGGGGATGGAATCTCGATCTTCGGAGCTTCAAATATTTGGATCGACCACGTTTCTATGTCCAACTGCGAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACCATCTCGAACTGTCACTTCACCCACCATAACGAGGTGATGTTATTTGGAGCAAGCGACAGCTATTCCGGCGATGCAATAATGCAAATTACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCGTCCACGTCGTTAACAACGACTACACGCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTACGCGCCGCCGGAGGTGTGGAAAAGTTGGACGTGGAGATCGGAGGGAGATCTAATGGTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAAGCAAGAGAAGGCCATATCAAAGGCTGGACATGATCTCCTACAAGCCCGGAACGTTCGTTTCCCGACTAACTCGCTTCGCCGGCGCACTCAACTGTCACTTCGGCAGGCCCTGTTAG | 1323 | 51.93 | MKMAEYGFKKRFFMISVLLLLGVVAHANIGEFDDYWKHREQEAKAAALDAYDPNPEAVADSLNAQVGKAIAGTNSTRRNLKKTKGPCRGTNPIDRCWRCDPNWANDRKKLATCVLGFGHQTTGGKDGRFYVVTDASDSDLINPKPGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVNSHKTIDARGADVHIAFGAGITVQFVNNVIIHGLHIHDIVAGTGGLIRDSVDHYGFRTRSDGDGISIFGASNIWIDHVSMSNCEDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDAIMQITVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLMVNGAFFVRSGDQSKRRPYQRLDMISYKPGTFVSRLTRFAGALNCHFGRPC | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 58299206 | 58301033 | + | Bda004598.1 | Bda01g02254 | 2254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g02254 | 440 | Pfam | Pectate lyase, N terminus | 28 | 80 | IPR007524 | GO:0030570 | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 173 | 189 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 113 | 130 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 381 | 405 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 339 | 358 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 317 | 336 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 411 | 434 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 137 | 162 | IPR018082 | - | |
Bda01g02254 | 440 | PRINTS | Pollen allergen Amb family signature | 237 | 258 | IPR018082 | - | |
Bda01g02254 | 440 | PANTHER | PECTATE LYASE | 11 | 440 | - | - | |
Bda01g02254 | 440 | PANTHER | PECTATE LYASE 18-RELATED | 11 | 440 | IPR045032 | GO:0030570 | |
Bda01g02254 | 440 | Gene3D | - | 90 | 433 | IPR012334 | - | |
Bda01g02254 | 440 | SUPERFAMILY | Pectin lyase-like | 91 | 431 | IPR011050 | - | |
Bda01g02254 | 440 | SMART | amb_all | 165 | 362 | IPR002022 | - | |
Bda01g02254 | 440 | Pfam | Pectate lyase | 174 | 356 | IPR002022 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g02254 | Bda11g01233 | CCT | |
Bda01g02254 | Bda11g01233 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g02254 | Bda-Chr1:58299206 | Bda13g01679 | Bda-Chr13:40172820 | 0 | dispersed | |
Bda01g02254 | Bda-Chr1:58299206 | Bda01g02260 | Bda-Chr1:58489689 | 1.26E-61 | proximal | |
Bda01g02254 | Bda-Chr1:58299206 | Bda11g01233 | Bda-Chr11:12847615 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g02254 | K01728 | - | csv:101206497 | 706.057 |