Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02254 ATGAAAATGGCGGAATATGGATTTAAGAAAAGATTTTTTATGATTTCGGTTTTGTTGCTGTTGGGAGTGGTGGCCCACGCCAATATCGGAGAGTTTGATGATTACTGGAAACATCGAGAACAGGAAGCCAAGGCGGCGGCGCTTGACGCTTATGATCCTAACCCTGAAGCCGTCGCTGATAGCTTAAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACAGCACAAGAAGGAACCTGAAGAAGACGAAGGGTCCATGCAGGGGGACGAACCCCATCGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAATGACAGGAAGAAGCTAGCCACCTGCGTTCTGGGCTTCGGTCACCAGACCACCGGAGGAAAAGACGGCCGATTCTACGTCGTTACCGACGCCTCCGACTCGGACCTGATTAACCCTAAACCAGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACCCAAGAGCTGATGGTGAACAGCCACAAAACCATCGACGCAAGAGGAGCCGACGTACATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAACAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTGCCGGCACCGGCGGATTGATCAGAGATTCGGTCGACCACTATGGGTTTAGAACGAGGAGTGACGGGGATGGAATCTCGATCTTCGGAGCTTCAAATATTTGGATCGACCACGTTTCTATGTCCAACTGCGAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACCATCTCGAACTGTCACTTCACCCACCATAACGAGGTGATGTTATTTGGAGCAAGCGACAGCTATTCCGGCGATGCAATAATGCAAATTACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCGTCCACGTCGTTAACAACGACTACACGCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTACGCGCCGCCGGAGGTGTGGAAAAGTTGGACGTGGAGATCGGAGGGAGATCTAATGGTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAAGCAAGAGAAGGCCATATCAAAGGCTGGACATGATCTCCTACAAGCCCGGAACGTTCGTTTCCCGACTAACTCGCTTCGCCGGCGCACTCAACTGTCACTTCGGCAGGCCCTGTTAG 1323 51.93 MKMAEYGFKKRFFMISVLLLLGVVAHANIGEFDDYWKHREQEAKAAALDAYDPNPEAVADSLNAQVGKAIAGTNSTRRNLKKTKGPCRGTNPIDRCWRCDPNWANDRKKLATCVLGFGHQTTGGKDGRFYVVTDASDSDLINPKPGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVNSHKTIDARGADVHIAFGAGITVQFVNNVIIHGLHIHDIVAGTGGLIRDSVDHYGFRTRSDGDGISIFGASNIWIDHVSMSNCEDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDAIMQITVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLMVNGAFFVRSGDQSKRRPYQRLDMISYKPGTFVSRLTRFAGALNCHFGRPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58299206 58301033 + Bda004598.1 Bda01g02254 2254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02254 440 Pfam Pectate lyase, N terminus 28 80 IPR007524 GO:0030570
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Bda01g02254 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Bda01g02254 440 PANTHER PECTATE LYASE 11 440 - -
Bda01g02254 440 PANTHER PECTATE LYASE 18-RELATED 11 440 IPR045032 GO:0030570
Bda01g02254 440 Gene3D - 90 433 IPR012334 -
Bda01g02254 440 SUPERFAMILY Pectin lyase-like 91 431 IPR011050 -
Bda01g02254 440 SMART amb_all 165 362 IPR002022 -
Bda01g02254 440 Pfam Pectate lyase 174 356 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02254 Bda11g01233 CCT
Bda01g02254 Bda11g01233 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02254 Bda-Chr1:58299206 Bda13g01679 Bda-Chr13:40172820 0 dispersed
Bda01g02254 Bda-Chr1:58299206 Bda01g02260 Bda-Chr1:58489689 1.26E-61 proximal
Bda01g02254 Bda-Chr1:58299206 Bda11g01233 Bda-Chr11:12847615 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02254 K01728 - csv:101206497 706.057