Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02255 AGAGAGAGAGAGATGGACGCCCCCTTATTGAAATCAGAACTTTGCCGGAGTGGAAGTAACTATATTGCGGCGGATAGTGAGCCGGGGGCTCACCGACGAGTAAAGAGACGTCGAAGAGATTCCTCTGCGATCGCAATCGGGTGTGGTAATCGACCTTTTGATCAGCTGCCTCAGAACCCATCTGAGCTTGATCAATCTACCACCATTGCTGCCCCAAAAAGAAGCTCGAGATATCGCGGAGTCAGCAGGCATAGATGGACAGGGAGATACGAAGCTCATTTATGGGATAAAGGTTCTTGGAATCCAACTCAAAAGAAGAAAGGAAAGCAAGGAGCTTACGATGAAGAAGAATCCGCAGCAAGAGCATATGATCTAGCCGCTCTCAAGTATTGGGGAGCATCCACTTTCACCAACTTTCCTATTTCTGATTACGAGAAAGAAATCGAGATTATGGTGAGTGTATCGAAAGAAGAATACTTAGCCACTTTAAGAAGAAGGAGTAGTGGTTTCTCCAGAGGTGTATCCAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGGAGATGGGAGGCAAGAATAGGAAGAGTGTTTGGAAACAAGTATCTGTATCTCGGCACTTACAGTACTCAAGAGGAAGCTGCTCGAGCTTACGATATAGCTGCAATTGAGTACAGAGGAATCAATGCAGTGACCAACTTTGATTTAAGCACATACATAAGATGGCTTAAACCCGAGCCTAATCTTCTTACGCCATGTTTGAAGTCATCACCAGCTAAACAGTCTCAGCTCCCCATAGCTTCTTCCTCTTCCATAGCTTCAACAGTCATGGAAGACACCCACTTGTCAATTTTTCCAGAAAAGCAAGAAACTGTTCATTCGATAACCAGAAATTCCCGGACTTCGCCTCCGTCTCCGACGGCTCTAGGACTCCTCCTAAAATCTTCAGTGTTCAGAGATCTGGTGGAGAAGAATTTGAACGGAGGAGTTGCAGAGAATGACACAGAAATTAATACGAAACGAAATAATATTCCTTATTTGTGCTCTTCCAGTGGCGGTTTAGTGTCTGCTCTGAGATCTGGTGAGGAGGAGAACAATTTAAGTTCTAAAATGGACAACTCTCTTTGGATTATGTCTGCTGCGTTTCATTCCAACTAA 1155 44.59 REREMDAPLLKSELCRSGSNYIAADSEPGAHRRVKRRRRDSSAIAIGCGNRPFDQLPQNPSELDQSTTIAAPKRSSRYRGVSRHRWTGRYEAHLWDKGSWNPTQKKKGKQGAYDEEESAARAYDLAALKYWGASTFTNFPISDYEKEIEIMVSVSKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPEPNLLTPCLKSSPAKQSQLPIASSSSIASTVMEDTHLSIFPEKQETVHSITRNSRTSPPSPTALGLLLKSSVFRDLVEKNLNGGVAENDTEINTKRNNIPYLCSSSGGLVSALRSGEEENNLSSKMDNSLWIMSAAFHSN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58302655 58304715 + Bda004599.1 Bda01g02255 2255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02255 384 ProSiteProfiles AP2/ERF domain profile. 77 140 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 CDD AP2 175 236 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 PRINTS Ethylene responsive element binding protein signature 216 236 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 28 342 - -
Bda01g02255 384 Pfam AP2 domain 175 226 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 Pfam AP2 domain 76 132 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 342 - -
Bda01g02255 384 SMART rav1_2 176 240 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 SMART rav1_2 77 146 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 Gene3D AP2/ERF domain 76 142 IPR036955 GO:0003700|GO:0006355
Bda01g02255 384 Gene3D AP2/ERF domain 175 236 IPR036955 GO:0003700|GO:0006355
Bda01g02255 384 MobiDBLite consensus disorder prediction 21 66 - -
Bda01g02255 384 SUPERFAMILY DNA-binding domain 175 236 IPR016177 GO:0003677
Bda01g02255 384 SUPERFAMILY DNA-binding domain 76 142 IPR016177 GO:0003677
Bda01g02255 384 ProSiteProfiles AP2/ERF domain profile. 176 234 IPR001471 GO:0003700|GO:0006355
Bda01g02255 384 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02255 Bda-Chr1:58302655 Bda01g02282 Bda-Chr1:59204511 1.40E-08 dispersed
Bda03g01557 Bda-Chr3:54748972 Bda01g02255 Bda-Chr1:58302655 8.44E-07 dispersed
Bda01g02255 Bda-Chr1:58302655 Bda13g01680 Bda-Chr13:40175782 7.38E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15520 PF00847 AP2 3.00E-09 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02255 - - dzi:111317631 407.142