Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02256 ATGTCCTCCTCGATTTGTTCTTCGTTTCGGAGTTTGGTGCCTCAATGGAGGCGCACGAATGTTCGGTTCTTGATTTTCCTTCACTCCAAGAGCACGATTAGCTTTTCCCCTCGCGTTTTTGCTTCGTTGTCGGATGAAGATTCTGTTTCAATGCCCAAACCAGCGCAGTTCGGTTATGATCCCTCGTCGGAGTTGTATGGACTGGTCGTCGATACGAAACGAAGGAATGCTACTTCAGAAGTACCTGAACCCAGGTCCTGGTTTGGTCCAAGTGGCCAGTATATCAAAGAGCTGCCTTGCCCAAATTGCCGGGCCAGGGGCTATACCCCTTGTACTGAATGTGGAATTGAAAGATCCAGAGCTGACTGCTCATTATGTAATGGAAAGGGGACAATGACATGTCAGCAATGCTCAGGAGATCGCGTCGTTTGGGAAGAATCCATTGATGAGAGACCATGGGAGAAAGTGCGCTCTAATTCTCCACTCCGAATGAAAGAAGATGATGAAGTGGATAATTTAGATATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGAATATATCAATCCCCATCTCGTGAAGTTGGATTAAAAATTAGTCGATCACTAAAAAGTCTCAATGCAAAAACAGGGATTTTTAGTAAAAGAATGAAAATTATCCATGGTGATCCCGCTCTTCAAGCACAGAGGGTGGCTGCAATCAAGAAAGCCAAAGGAAGTGATGCAGCGAGAAAGAAAGCCTCTGACGCTCTAAAAGCGTTCTTTAGTGACCCAGAAAATCGAAGGCTGAGGAGTGTAGCCATGAAAGGTGTCAAGTTTTACTGCAAAAACTGTGGAAAGGAGGGCCATAGAAGACACTACTGTCCAGAACTTGGCTTGGTCAGCCGGAAATTCAAATGTCGAGCATGTGGCAAGAAGGGACATAATATAAGAACTTGTAAGAAGCTCAAATTTAGGAAGGATAAGCATTGCAGAGTATGTGGGGAAAGTGGTCACAAGAGAAGGACTTGCCCGGTTTTGGTATCTAAATCTAAATCTAAACTACGCAATCAAAATGATAAGGCAAAGCATCATAGCTGCCGAATTTGTCGTCAAATGGGTCATAATCAGCGGAAGTGTCCGACGAAGATGACGATAAATTTATCCGAAATGGAAGGGAAAACTATCGTTTTGAAGTCCGGGAGAAGGAAATATACTTGCGGGTTTTGTGGAGAGGACAAACATAATGTAAGAACATGCTCTGATCGGAAAGATGAATTACTTGCAGATCAATCGACCAATCAATGA 1284 43.54 MSSSICSSFRSLVPQWRRTNVRFLIFLHSKSTISFSPRVFASLSDEDSVSMPKPAQFGYDPSSELYGLVVDTKRRNATSEVPEPRSWFGPSGQYIKELPCPNCRARGYTPCTECGIERSRADCSLCNGKGTMTCQQCSGDRVVWEESIDERPWEKVRSNSPLRMKEDDEVDNLDIKLEEKKKSKRIYQSPSREVGLKISRSLKSLNAKTGIFSKRMKIIHGDPALQAQRVAAIKKAKGSDAARKKASDALKAFFSDPENRRLRSVAMKGVKFYCKNCGKEGHRRHYCPELGLVSRKFKCRACGKKGHNIRTCKKLKFRKDKHCRVCGESGHKRRTCPVLVSKSKSKLRNQNDKAKHHSCRICRQMGHNQRKCPTKMTINLSEMEGKTIVLKSGRRKYTCGFCGEDKHNVRTCSDRKDELLADQSTNQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58334558 58338107 - Bda004600.1 Bda01g02256 2256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02256 427 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 8 338 - -
Bda01g02256 427 SUPERFAMILY Retrovirus zinc finger-like domains 271 314 IPR036875 GO:0003676|GO:0008270
Bda01g02256 427 ProSiteProfiles Zinc finger CCHC-type profile. 323 337 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 Gene3D - 352 425 - -
Bda01g02256 427 Gene3D - 293 351 - -
Bda01g02256 427 ProSiteProfiles Zinc finger CCHC-type profile. 298 314 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 8 338 - -
Bda01g02256 427 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 322 417 - -
Bda01g02256 427 SUPERFAMILY Retrovirus zinc finger-like domains 348 376 IPR036875 GO:0003676|GO:0008270
Bda01g02256 427 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 322 417 - -
Bda01g02256 427 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 SMART c2hcfinal6 322 338 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 SMART c2hcfinal6 398 414 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 SMART c2hcfinal6 298 314 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Bda01g02256 427 ProSiteProfiles Zinc finger CCHC-type profile. 274 289 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02170 Bda-Chr1:57615529 Bda01g02256 Bda-Chr1:58334558 0 dispersed
Bda01g02171 Bda-Chr1:57626105 Bda01g02256 Bda-Chr1:58334558 0 dispersed
Bda01g02256 Bda-Chr1:58334558 Bda01g02283 Bda-Chr1:59235617 1.35E-102 dispersed
Bda15g00623 Bda-Chr15:9392725 Bda01g02256 Bda-Chr1:58334558 5.55E-06 dispersed
Bda15g01066 Bda-Chr15:19840773 Bda01g02256 Bda-Chr1:58334558 9.65E-06 dispersed
Bda15g01069 Bda-Chr15:19914472 Bda01g02256 Bda-Chr1:58334558 9.65E-06 dispersed
Bda01g02256 Bda-Chr1:58334558 Bda01g02258 Bda-Chr1:58388422 2.58E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02256 - - csv:101211176 561.222