Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g02260 | ATGGTTATCCGCCTAACCCAAGAGCTGATGGTGAACAACCACAAAACCATCGACGCAAGAGGAGCCGAAGTACATATCGCATTCGGAGCCGGAATTACGGTTCAGTTTGTGAAGAATGCGATCATCCATGGCCTACATATCCACGACATTGTTTCCGGCACCGGCGGATTGATCAGAGATTTGGTCGACCACTATGGGTTTAGAACGAGGAGCGACGGGGATGGAATCTCGATCTTCGGATCTTCAAATATTTGGATCGACCACATTTCTATGTCCAACTGCAAAGATGGACTGATCGACGCAATTGTTTTTCAGTATGAAAGAGTGGCATGA | 333 | 47.15 | MVIRLTQELMVNNHKTIDARGAEVHIAFGAGITVQFVKNAIIHGLHIHDIVSGTGGLIRDLVDHYGFRTRSDGDGISIFGSSNIWIDHISMSNCKDGLIDAIVFQYERVA | 110 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 58489689 | 58490021 | - | Bda004611.1 | Bda01g02260 | 2260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g02260 | 110 | PRINTS | Pollen allergen Amb family signature | 72 | 93 | IPR018082 | - | |
| Bda01g02260 | 110 | PRINTS | Pollen allergen Amb family signature | 8 | 24 | IPR018082 | - | |
| Bda01g02260 | 110 | SUPERFAMILY | Pectin lyase-like | 1 | 102 | IPR011050 | - | |
| Bda01g02260 | 110 | SMART | amb_all | 1 | 110 | IPR002022 | - | |
| Bda01g02260 | 110 | PANTHER | PECTATE LYASE | 1 | 103 | - | - | |
| Bda01g02260 | 110 | Gene3D | - | 1 | 105 | IPR012334 | - | |
| Bda01g02260 | 110 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 103 | IPR045032 | GO:0030570 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g02260 | Bda-Chr1:58489689 | Bda13g01679 | Bda-Chr13:40172820 | 6.46E-51 | dispersed | |
| Bda01g02254 | Bda-Chr1:58299206 | Bda01g02260 | Bda-Chr1:58489689 | 1.26E-61 | proximal | |
| Bda01g02260 | Bda-Chr1:58489689 | Bda11g01233 | Bda-Chr11:12847615 | 2.67E-61 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g02260 | K01728 | - | csv:101217922 | 173.711 |