Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02260 ATGGTTATCCGCCTAACCCAAGAGCTGATGGTGAACAACCACAAAACCATCGACGCAAGAGGAGCCGAAGTACATATCGCATTCGGAGCCGGAATTACGGTTCAGTTTGTGAAGAATGCGATCATCCATGGCCTACATATCCACGACATTGTTTCCGGCACCGGCGGATTGATCAGAGATTTGGTCGACCACTATGGGTTTAGAACGAGGAGCGACGGGGATGGAATCTCGATCTTCGGATCTTCAAATATTTGGATCGACCACATTTCTATGTCCAACTGCAAAGATGGACTGATCGACGCAATTGTTTTTCAGTATGAAAGAGTGGCATGA 333 47.15 MVIRLTQELMVNNHKTIDARGAEVHIAFGAGITVQFVKNAIIHGLHIHDIVSGTGGLIRDLVDHYGFRTRSDGDGISIFGSSNIWIDHISMSNCKDGLIDAIVFQYERVA 110
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 58489689 58490021 - Bda004611.1 Bda01g02260 2260
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02260 110 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Bda01g02260 110 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Bda01g02260 110 SUPERFAMILY Pectin lyase-like 1 102 IPR011050 -
Bda01g02260 110 SMART amb_all 1 110 IPR002022 -
Bda01g02260 110 PANTHER PECTATE LYASE 1 103 - -
Bda01g02260 110 Gene3D - 1 105 IPR012334 -
Bda01g02260 110 PANTHER PECTATE LYASE 18-RELATED 1 103 IPR045032 GO:0030570
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02260 Bda-Chr1:58489689 Bda13g01679 Bda-Chr13:40172820 6.46E-51 dispersed
Bda01g02254 Bda-Chr1:58299206 Bda01g02260 Bda-Chr1:58489689 1.26E-61 proximal
Bda01g02260 Bda-Chr1:58489689 Bda11g01233 Bda-Chr11:12847615 2.67E-61 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02260 K01728 - csv:101217922 173.711