Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02282 GGAGCTTATGATGAAGAAGAATCAGCAGCAAGAGCATATGATCTAGCCGCTCTCAAGTACTGGATTTCTGATTACGAGAAAGAAATCGAGATTATGGTGAGTGTATCGAAAGAAGAATACTTAGCCACATTAGAAAGAAGGAGTAGTGGTTTCTCCAGAGGTGTATCCAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGGAGATGGGAGGCAAGAATAGGAAGAGTGTTTGGAAACAAGTATCTGTATCTCGGCACTTACAGTACTCAAGAGGAAGCTGCTCGAGCTTACGATATAGCTGCAATTGAGTACAGAGGAATCAATGCAGTGACCAACTTTGATTTAAGCACATACATAAGATGGCTTAAACCCGAGCCTAATCTTCTTACGCAATGTTTGAAGTCATCACCAGCTAAACAGTCTCAGCTCCCCATAGCTTCTTCCTCTTCCATAGCTTCAACAGTCATGGAAGACACCCACTTGTCAATTTTTTCAGAAAAACAAGAAACTGTTCATTCGATAACCAGAAATTCGCGGACTGCGCCTCCGTCTCCGACGGCTCTAGGACTCCTCCTAAAATCTTCAGTGCTCAGAGATCTGGTGGAGAAGAATTTGAACGGAGGAGTTGCAGAGAATGACACAGAAATTGATACAAAACGAAACAATATTCCTTATTTGTGCTCTTCCAGTGGAGGTTTAGTATCTGCTCTGAGATCTGGTGAGGAGGAGAACAATTTGAGTTCTAAAATAGACAACTCTCTTTGGATTATGTTTGCTGCGTTTCATTCCAACTAA 798 42.23 GAYDEEESAARAYDLAALKYWISDYEKEIEIMVSVSKEEYLATLERRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPEPNLLTQCLKSSPAKQSQLPIASSSSIASTVMEDTHLSIFSEKQETVHSITRNSRTAPPSPTALGLLLKSSVLRDLVEKNLNGGVAENDTEIDTKRNNIPYLCSSSGGLVSALRSGEEENNLSSKIDNSLWIMFAAFHSN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59204511 59205647 + Bda004660.1 Bda01g02282 2282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02282 265 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 223 - -
Bda01g02282 265 Gene3D AP2/ERF domain 56 117 IPR036955 GO:0003700|GO:0006355
Bda01g02282 265 Gene3D AP2/ERF domain 1 28 IPR036955 GO:0003700|GO:0006355
Bda01g02282 265 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 223 - -
Bda01g02282 265 SUPERFAMILY DNA-binding domain 56 117 IPR016177 GO:0003677
Bda01g02282 265 Pfam AP2 domain 56 107 IPR001471 GO:0003700|GO:0006355
Bda01g02282 265 SMART rav1_2 57 121 IPR001471 GO:0003700|GO:0006355
Bda01g02282 265 CDD AP2 56 117 IPR001471 GO:0003700|GO:0006355
Bda01g02282 265 ProSiteProfiles AP2/ERF domain profile. 57 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02255 Bda-Chr1:58302655 Bda01g02282 Bda-Chr1:59204511 1.40E-08 dispersed
Bda01g02282 Bda-Chr1:59204511 Bda10g00763 Bda-Chr10:42073745 5.82E-61 dispersed
Bda01g02282 Bda-Chr1:59204511 Bda13g01680 Bda-Chr13:40175782 9.73E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15522 PF00847 AP2 4.40E-12 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02282 - - dzi:111317631 287.73