Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00011 ATGGCTGATAATCATGAAACAGATAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAGGCTTTGGAATCTGCACGAGGTAATGGTACCAGCATGATATCTCTTATAATGCCACCCCGTGATCAAGTATCACGAGTTACAAAGATGCTTGGTGATGAATATGGGACTGCTTCAAACATCAAAAGCAGAGTCAACCGACAATCTGTTTTGGGTGCCATTACTTCTGCTCAACAGAGGCTGAAACTTTATAATAAAGTTCCTCCCAATGGATTAGTCCTTTATACTGGGACAATTGTCACTGACGATGGGAAGGAAAAGAAGGTCACCATTGACTTTGAGCCCTTCAAGCCTATAAATGCATCTTTGTATCTTTGCGACAACAAGTTTCACACTGAAGCACTGAATGAACTCTTAGAATCGGATGATAAGTTTGGTTTTATTGTCATGGATGGGAACGGTACACTTTTTGGGACGTTAAGTGGTAACACAAGAGAGGTCCTTCATAAATTTACAGTTGATTTACCAAAGAAGCATGGAAGAGGTGGGCAGTCAGCCTTACGTTTTGCTCGTCTTCGGATGGAAAAGCGGCACAACTATGTGAGAAAAACCGCTGAGCTTGCCACTCAGTTCTTCATCAATCCAGCTACCAGCCAGCCTAATGTTGCTGGGCTAATATTGGCCGGTTCAGCTGACTTCAAAACCGAACTCAGCCAATCTGATATGTTCGATCCTCGTTTGCAAGCAAAAATATTGAATGTGGTTGATGTTTCATATGGAGGTGAAAACGGTTTCAATCAGGCTATCGAACTGTCATCTGAAATTCTATCGAACGTGAAATTCATACAGGAGAAACGGCTGATTGGAAAATACTTTGAAGAGATCAGCCAGGACACAGGGAAATATGTTTTTGCAGTGGATGACACTTTGAAGGCTCTAGAAATGGGAGCCATAGAGACTCTCATTGTGTGGGAAAATCTAGATATCAACAGGTATGTGTTGAAAAACAGTGTGACAGGGGAGGTTGTGATAAAACACCTGAACAAGGAACAAGAGGCTGATCAGAGCAACTTCCGGGACCTGGCTACCTCGGCCGAGCTGGAAGTTCAGGAGAAGATGCCTCTACTTGAGTGGTTTGCAAACGAGTACAAGAGGTTTGGGTGTACACTTGAGTTTGTGACCAATAAATCCCAAGAAGGATCACAATTTTGTCGAGGGTTTGGTGGAATCGGAGGCATTTTACGCTACCAGCTTGACATAAGATCATTCGACGAGTTATCGGATGATGGGGGAGTCTATGAGGACTCAGATTAA 1314 42.77 MADNHETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFAVDDTLKALEMGAIETLIVWENLDINRYVLKNSVTGEVVIKHLNKEQEADQSNFRDLATSAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGGVYEDSD 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 843436 844749 + Bda014239.1 Bda02g00011 2306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00011 437 Pfam eRF1 domain 2 144 277 IPR005141 -
Bda02g00011 437 SUPERFAMILY Translational machinery components 142 276 - -
Bda02g00011 437 SMART eRF1_1_2 4 140 IPR005140 -
Bda02g00011 437 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 437 - -
Bda02g00011 437 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Bda02g00011 437 Gene3D - 279 437 IPR029064 -
Bda02g00011 437 Gene3D eRF1 domain 1 1 135 IPR024049 -
Bda02g00011 437 Pfam eRF1 domain 1 18 138 IPR005140 -
Bda02g00011 437 Gene3D eRF1 domain 2 136 277 IPR042226 -
Bda02g00011 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Bda02g00011 437 Pfam eRF1 domain 3 281 418 IPR005142 -
Bda02g00011 437 SUPERFAMILY L30e-like 278 420 IPR029064 -
Bda02g00011 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 437 IPR004403 GO:0003747|GO:0006415
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00011 Bda-Chr2:843436 Bda07g00705 Bda-Chr7:8337347 0 dispersed
Bda02g00011 Bda-Chr2:843436 Bda09g00781 Bda-Chr9:14648475 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00011 K03265 - qsu:111999806 842.802