Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00013 ATGACATGTGCAGCATGTGTGAACTCTGTTGAAGGAATTTTGAGAAATCTTCCTGGTGTTAAAAAGGCAGTGGTAGCTTTAGCGACTTCTTTAGGGGAAGTTGAGTACGATCCGACTGTAATTAGTAAAGATGATATTGTGGAGGCAATAGAAGACGCTGGCTTTGAGGCTTCACTTGTACGCAGCAGCGAGCAGGATAAACTAATGCTGGGGGTTTCTGGTGTATTTTGTGAGATAGATGCACAATTTTTGGAAGGCATTCTCATCAACCTGAATGGGGTGAGACAATTTCGTTTTGACAGGATATCAAGAGAATTGGAAGTTTTTTTTGACCCCGAGGTTGTCAATTCTAGATCCTTAGTGGATGAGATTGTGGGAGGAAGCAATGGGAAGTTTATATTACATGTCTTAAGCCCCTATAGCAGAATGACTACCAAAGCCGTCGCAGAAACCTCTACTATGTTTCGCCTATTCACATCCAGTTTGTTTCTTAGTATTCCAGTCTTTTTCATACGGGTAATTTGTCCGCACATTCCTCTGTTGTACTCCTTGATACTCTGGAGATGTGGACCTTTCCTTATGGGAGATTGGTTGAAGTGGGCTCTGGTGAGTGTAGTTCAATTTGTGATTGGAAAGCGATTTTACGTAGCAGCTTTTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTATTAGTCGCCTTGGGTACTTCAGCCTCTTACTTCTACTCTGTTTGTGCACTTCTATATGGAGCAGCTACTGGGTTTTGGTCTCCCACATACTTTGAAACAAGTTCCATGCTAATTACATTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCTAAGGGGAAAACATCAGATGCCATCAAGAAGCTTGTAGAACTTGCCCCTGCAACTGCTTTATTGGTCGTGAAAGATAAAGATGGGAAATTGGTTGAAGAAAGGTTAATAGATGCTTTGCTTATTCAGCCTGGTGACACATTGAAAGTTCTTCCTGGTGCCAAAATTCCAGCTGATGGTGTGGTTGTCTGGGGATCGAGTTATGTTAATGAGAGCATGGTAACGGGTGAATCTGTACCTATTTTAAAGGAGCTCTACTCTCCAGTTGTTGGAGGTACAATTAATTTGCATGGTGCTCTTAATATAGAAGCAAAGAAAGTCGGGTCTGATACAGTTTTGAAGCCAGATCATTAG 1197 41.52 MTCAACVNSVEGILRNLPGVKKAVVALATSLGEVEYDPTVISKDDIVEAIEDAGFEASLVRSSEQDKLMLGVSGVFCEIDAQFLEGILINLNGVRQFRFDRISRELEVFFDPEVVNSRSLVDEIVGGSNGKFILHVLSPYSRMTTKAVAETSTMFRLFTSSLFLSIPVFFIRVICPHIPLLYSLILWRCGPFLMGDWLKWALVSVVQFVIGKRFYVAAFRALRNGSTNMDVLVALGTSASYFYSVCALLYGAATGFWSPTYFETSSMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKDGKLVEERLIDALLIQPGDTLKVLPGAKIPADGVVVWGSSYVNESMVTGESVPILKELYSPVVGGTINLHGALNIEAKKVGSDTVLKPDH 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 857422 859182 + Bda014242.1 Bda02g00013 2308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00013 398 Gene3D - 283 396 - -
Bda02g00013 398 PRINTS Copper-transporting ATPase 1 signature 158 179 - -
Bda02g00013 398 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Bda02g00013 398 PRINTS Copper-transporting ATPase 1 signature 212 237 - -
Bda02g00013 398 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Bda02g00013 398 SUPERFAMILY Calcium ATPase, transduction domain A 316 394 IPR008250 -
Bda02g00013 398 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Bda02g00013 398 PANTHER HEAVY METAL P-TYPE ATPASE 1 394 - -
Bda02g00013 398 ProSiteProfiles Heavy-metal-associated domain profile. 67 124 IPR006121 GO:0046872
Bda02g00013 398 Pfam E1-E2 ATPase 296 394 - -
Bda02g00013 398 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872
Bda02g00013 398 Gene3D - 1 60 - -
Bda02g00013 398 PANTHER ATP7, ISOFORM B 1 394 - -
Bda02g00013 398 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872
Bda02g00013 398 SUPERFAMILY HMA, heavy metal-associated domain 65 124 IPR036163 GO:0046872
Bda02g00013 398 CDD HMA 1 58 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00013 Bda-Chr2:857422 Bda02g00638 Bda-Chr2:47308779 2.21E-92 dispersed
Bda02g00013 Bda-Chr2:857422 Bda09g00789 Bda-Chr9:14748283 3.98E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00013 K17686 - pop:7461971 659.448