Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00052 | ATGGGTAGGGGAAAGATTGAGATCAAACGGATCGAAAACACTACAAATCGACAAGTCACCTTCTGCAAAAGGAGAAACGGTTTGCTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCACCAGGGGTCGCCTCTACGAGTATGCAAACAACAGTGTTAAGGAAACAATTGAAAGATATAAAAAGGTAAGCTGTGATTCATCAAACACCGGATCGATTTCAGAAGCTAATGCTCAGTTTTACCAAGAAGAAGTTAATAAGTTGCAGATGCTGATCTCAAAGTTGCAAAATTCAAACCAGAATATGATGGGGGAGTCTGTGAGTTCTTTGTCTTTCAAGAAATTGAAAGATTTGGACATTAAGTTAGAGAAAGCAATTAGCAAGGTCAGATCCAAAAAGGTAATTATTTTCTATCTCTTTCGGTGTTACTAA | 459 | 38.78 | MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKETIERYKKVSCDSSNTGSISEANAQFYQEEVNKLQMLISKLQNSNQNMMGESVSSLSFKKLKDLDIKLEKAISKVRSKKVIIFYLFRCY | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2267811 | 2270711 | - | Bda014301.1 | Bda02g00052 | 2347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00052 | 152 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | ProSiteProfiles | K-box domain profile. | 87 | 152 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda02g00052 | 152 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Bda02g00052 | 152 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | Coils | Coil | 87 | 114 | - | - | |
Bda02g00052 | 152 | Pfam | K-box region | 85 | 143 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda02g00052 | 152 | SUPERFAMILY | SRF-like | 2 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | PANTHER | FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE | 1 | 143 | - | - | |
Bda02g00052 | 152 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda02g00052 | 152 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 143 | - | - | |
Bda02g00052 | 152 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00052 | Bda-Chr2:2267811 | Bda06g00261 | Bda-Chr6:4487067 | 4.84E-76 | dispersed | |
Bda02g00052 | Bda-Chr2:2267811 | Bda02g00061 | Bda-Chr2:2477362 | 4.39E-84 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15528 | PF01486 | K-box | 4.40E-15 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00052 | K09264 | - | vvi:100261787 | 223.016 |