Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00052 ATGGGTAGGGGAAAGATTGAGATCAAACGGATCGAAAACACTACAAATCGACAAGTCACCTTCTGCAAAAGGAGAAACGGTTTGCTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCACCAGGGGTCGCCTCTACGAGTATGCAAACAACAGTGTTAAGGAAACAATTGAAAGATATAAAAAGGTAAGCTGTGATTCATCAAACACCGGATCGATTTCAGAAGCTAATGCTCAGTTTTACCAAGAAGAAGTTAATAAGTTGCAGATGCTGATCTCAAAGTTGCAAAATTCAAACCAGAATATGATGGGGGAGTCTGTGAGTTCTTTGTCTTTCAAGAAATTGAAAGATTTGGACATTAAGTTAGAGAAAGCAATTAGCAAGGTCAGATCCAAAAAGGTAATTATTTTCTATCTCTTTCGGTGTTACTAA 459 38.78 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKETIERYKKVSCDSSNTGSISEANAQFYQEEVNKLQMLISKLQNSNQNMMGESVSSLSFKKLKDLDIKLEKAISKVRSKKVIIFYLFRCY 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2267811 2270711 - Bda014301.1 Bda02g00052 2347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00052 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 ProSiteProfiles K-box domain profile. 87 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda02g00052 152 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bda02g00052 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 Coils Coil 87 114 - -
Bda02g00052 152 Pfam K-box region 85 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda02g00052 152 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Bda02g00052 152 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 1 143 - -
Bda02g00052 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda02g00052 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Bda02g00052 152 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00052 Bda-Chr2:2267811 Bda06g00261 Bda-Chr6:4487067 4.84E-76 dispersed
Bda02g00052 Bda-Chr2:2267811 Bda02g00061 Bda-Chr2:2477362 4.39E-84 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15528 PF01486 K-box 4.40E-15 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00052 K09264 - vvi:100261787 223.016