Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00061 ATGTCTAATTCACCTCAAAGAAAAATGGGTAGGGGAAAGATCGAGATCAAACGGATTGAAAACACTACAAATCGTCAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAGGCTTATGAGCTTTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCGCCCGGGGTCGTCTCTACGAGTATGCAAATAACAGTGTTAAAGAAACAATTCGGAGGTATAAAAAGGTAAGCTGTAATTCGCCAAACACCGGATCGATTTCGGAAGCTAATGCTCAGTTTTACCAAGAAGAAGCTGATAAGCTCCGGACGCTAATTGCTAACTTGCAAAATTCAAACAAAAATATGATGGCAGAATCTGTAAGTTCCTTGCCTATGAATGAGTTGAGAAAAATGGATGGTAGGTTAGAGAAAGCAATCAGCAAGATCAGATCCAAAAAGAATGAGCTCCTCTTTGCAGAGATCGAGTACATGCGCAAAAGGGAAATTGACTTGCACAACAATAATCAGCTTCTTCGAGCAAAGATAGCAGAGAATGAGAGAAACCAGCAAAACATGAACGTGATGGGAGGAGGAAGCTTTGAACTAATGCAGTCTCCACAATATGACGTCAGAAACTATTTTCAAGTGAATGCATTACAACCCGCCAATCAGGAGTATCCACGTCAAGACCACATGTCCCTTCAATTAGGG 702 41.88 MSNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSARGRLYEYANNSVKETIRRYKKVSCNSPNTGSISEANAQFYQEEADKLRTLIANLQNSNKNMMAESVSSLPMNELRKMDGRLEKAISKIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAENERNQQNMNVMGGGSFELMQSPQYDVRNYFQVNALQPANQEYPRQDHMSLQLG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2477362 2482679 + Bda033396 Bda02g00061 2356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00061 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Bda02g00061 234 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda02g00061 234 Gene3D - 21 99 IPR036879 GO:0003677|GO:0046983
Bda02g00061 234 Coils Coil 95 122 - -
Bda02g00061 234 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Bda02g00061 234 CDD MADS_MEF2_like 10 84 IPR033896 GO:0000977|GO:0045944
Bda02g00061 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 222 - -
Bda02g00061 234 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Bda02g00061 234 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Bda02g00061 234 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Bda02g00061 234 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Bda02g00061 234 Pfam K-box region 93 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda02g00061 234 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Bda02g00061 234 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 222 - -
Bda02g00061 234 Coils Coil 132 159 - -
Bda02g00061 234 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00061 Bda09g01242 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00834 Bda-Chr1:39609393 Bda02g00061 Bda-Chr2:2477362 1.16E-44 dispersed
Bda02g00061 Bda-Chr2:2477362 Bda06g00261 Bda-Chr6:4487067 4.23E-71 dispersed
Bda02g00052 Bda-Chr2:2267811 Bda02g00061 Bda-Chr2:2477362 4.39E-84 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15529 PF01486 K-box 6.50E-22 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00061 K09264 - tcc:18596599 363.229