Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00085 ATGGACGTCAGCGAGGAGATTCGTGCTGCTCACAAGCGAGATTTTTTGGAATTCCTCGAACAAGATGTAGGGAAAGGCATATACATGGACGAAATCAAGGTATTGATCAACCATAAGCGCCGCCGAATTATCGTCAACATCTCTGATCTACATTCCTTCCGCGATCTCGGTCCCAGAATTCTTAGGAATCCAAGTGAGTACATGCAATCATTCTGTGATGCTGTCACAGAAACTGCACGTAGCATTGATCAAAAATACCTCAAGGAAGGAGAGCAAGTTTTGGTGGGTTTTGAGGGCCCTTTTGTCTCTCGTCGTGTCACACCCAGAGAACTTCTCTCTGAGTTCATTGGCTCCATGGTCTGTGTTGAGGGAATCATTACCAAATGTTCTCTTGTGCGGCCAAAAGTTGTTAAAAGTGTTCACTTCTGTCCCAAAACTGGGAGTTTTACCAGTCGTGAATACAGAGATATTACATCCAACATGGGTTTACCTACAGGCTCTGTTTATCCTACAAGGGATGAAAGTGGGAACTTGTTGGTTACTGAATATGGATTATGTAAATACAAAGATCATCAAGCCTTATCAATGCAAGAAGTTCCAGAGAATTCAGCTCCTGGCCAGCTTCCAAGAACAGTTGATGTGATAGTGGAGGATGACTTGGTTGATTCGTGCAAGCCTGGAGATCGCGTTGCTATTGTCGGAATATACAAAGCACTTCCTGGGAAAAGTAAAGGCTGTGTGAACGGAGTATTTAGGTATGACATCAATATGATGATGGTTGGGGATCCCTCTGTCGCCAAGTCTCAGTTACTACGAGCAATATTGAATATTGCCCCCTTGGCGATCTCAACAACCGGGCGTGGTTCTTCTGGTGTTGGTTTGACTGCTGCTGTTACTTCTGATCAAGAAACTGGTAATAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATAGGGGTGTAGTCTGCATAGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCGATACATGAAGTAATGGAGCAACAGACAGTAACTATTGCAAAAGCTGGTATACATGCGTCACTGAATGCAAGGTGTAGCGTAATAGCTGCTGCAAATCCTATATATGGAACTTACGATCGATCGCTGACTCCAACAAAGAATATTGGGCTTCCAGACTCATTACTTTCCCGTTTCGATTTACTCTTCATTGTACTAGATCAAATGGATCCTGATATTGACCGGCACATATCAGAGCATGTGTTACGCATGCATCGTTATCGCTCTGCAGTCGATGGAGGTGATGGAACTCATGATGCAAGCTCCAGATACGGAAGAGAAGAAGAAGCTGAGACTGACTCATCTGTGTTTGTTAAATATAATAGAATGCTACATGGGAGAAAAACAGATCGGGGTAGGAAGCGTGATACACTTACTATTAAGTTTCTTAAGAAATACATTCATTACGCCAAGCACAGGATACAGCCTGACCTAACTGATGAGGCTTCTGAACACATTGCAACTGCTTATGCTGAGCTTAGAAATTCGAGTTCAAATGCAAAGGCATGTAGATATTTAACAATTTATGATACTGGAGGAACGCTCCCAATCACTGCCAGAACTTTAGAAACCATTATAAGACTCTCAACTGCTCATGCCAAATTAAAGTTGAGCAGAAAGGTTTCCAAATCTGATGTTGAAGCTGCTCTAAAAGTTTTAAATTTTGCAATATATCATAAAGAGTTGACTGAGATGGAGGAGCGTGAGGAAGAAAGAGACAGGGAAATGGAGAGAAAACGCCAAGCTGACAATCATGCTAATGAAAATAGTAGACCAGATCGTGGTACCAAAAGAAAAGACGTTTCAACTACGGATGCCATGGATTTTGATGATTCTCCCGCCAGATCTCCAACCAGCCTATCTTCTGAAAGAATAGGAGAATTTAATACATTATTTGGTCAGCATATGCGCTCAAATCGCTTGGACCTCATATCTATTGATGAAATTGAGAATGTGGTCAATGGCTCAGCTGGTGTGCATTATACGAAGGCAGAGATAAAGTTACTACTAGAGAAATTGCAAGATGATAACAGAGTTATGATAGCTGACGGGGTGGTGCGAATGATAACATAG 2121 42.2 MDVSEEIRAAHKRDFLEFLEQDVGKGIYMDEIKVLINHKRRRIIVNISDLHSFRDLGPRILRNPSEYMQSFCDAVTETARSIDQKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPKTGSFTSREYRDITSNMGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQALSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKALPGKSKGCVNGVFRYDINMMMVGDPSVAKSQLLRAILNIAPLAISTTGRGSSGVGLTAAVTSDQETGNRRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSAVDGGDGTHDASSRYGREEEAETDSSVFVKYNRMLHGRKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATAYAELRNSSSNAKACRYLTIYDTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREEERDREMERKRQADNHANENSRPDRGTKRKDVSTTDAMDFDDSPARSPTSLSSERIGEFNTLFGQHMRSNRLDLISIDEIENVVNGSAGVHYTKAEIKLLLEKLQDDNRVMIADGVVRMIT 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3920657 3925767 + Bda014357.1 Bda02g00085 2380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00085 706 PANTHER DNA HELICASE 252 698 - -
Bda02g00085 706 Pfam MCM N-terminal domain 12 83 IPR027925 -
Bda02g00085 706 Gene3D - 109 237 IPR012340 -
Bda02g00085 706 Gene3D - 3 99 - -
Bda02g00085 706 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 252 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 252 698 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 MobiDBLite consensus disorder prediction 580 638 - -
Bda02g00085 706 Pfam MCM P-loop domain 249 421 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 585 IPR027417 -
Bda02g00085 706 SMART mcm 104 574 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 Gene3D - 238 577 IPR027417 -
Bda02g00085 706 PANTHER DNA HELICASE 3 252 - -
Bda02g00085 706 ProSitePatterns MCM family signature. 320 328 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bda02g00085 706 Pfam MCM AAA-lid domain 478 570 IPR041562 -
Bda02g00085 706 Pfam MCM OB domain 109 239 IPR033762 -
Bda02g00085 706 SUPERFAMILY Nucleic acid-binding proteins 13 250 IPR012340 -
Bda02g00085 706 SMART AAA_5 253 406 IPR003593 -
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein family signature 252 267 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein family signature 364 376 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein family signature 312 326 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein family signature 340 353 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bda02g00085 706 Coils Coil 575 601 - -
Bda02g00085 706 Gene3D - 135 189 - -
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Bda02g00085 706 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Bda02g00085 706 MobiDBLite consensus disorder prediction 580 622 - -
Bda02g00085 706 ProSiteProfiles MCM family domain profile. 234 417 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00085 Bda-Chr2:3920657 Bda09g00338 Bda-Chr9:4340736 1.24E-09 dispersed
Bda02g00085 Bda-Chr2:3920657 Bda14g00572 Bda-Chr14:4347542 5.84E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00085 K02541 - jre:108990186 706.827