Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00187 ATGGTGAAGTCGAAGAAGTTCAGAGGAGTCAGGCAGAGACATTGGGGATCATGGGTATCGGAGATTCGCCATCCATTACTAAAGAGAAGGATATGGCTAGGAACATTTGATACAGCCGAAGAGGCAGCCAAAGCATACGATCAAGCCGCCATTTTAATGAGCGGCCAGAATGCCAAAACTAATTTTCCAGCGGCTTCCCTCAGAGACTCCAACCCCAGGGTGGATTCGCCATCTTCACCGGAAAATTTATCAGATATTCTCCATGCCAAGCTAAGAAAGTGCTGCAAATCTCCTTCGCCTTCAATGACCTGCTTGAGGCTCGACGCACAGAATTCTTATATCGGCGTTTGGCAAAAGCGTGCGGGTCAAAGCGCCGCTTCCCACTGGGTCATGACGTTTCAGCTCGGGAATGAGAAGAAAAATTGTCTTGAGATTTCGCCTTCTTCCCCTTCGTCTTTCAGGCAAGTTCAGCTTCCGCCATCGGAAGCACCTGAAGTCGTTCCCGCTCAGATCAATGAAGAAGAGGCACTTGCACTGCAAATGATAGAGGAACTGCTTTCTATTAACGAGGATGAGAACTTGTACCATTAG 591 48.22 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFDTAEEAAKAYDQAAILMSGQNAKTNFPAASLRDSNPRVDSPSSPENLSDILHAKLRKCCKSPSPSMTCLRLDAQNSYIGVWQKRAGQSAASHWVMTFQLGNEKKNCLEISPSSPSSFRQVQLPPSEAPEVVPAQINEEEALALQMIEELLSINEDENLYH 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36024788 36025517 - Bda014765.1 Bda02g00187 2482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00187 196 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bda02g00187 196 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bda02g00187 196 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bda02g00187 196 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bda02g00187 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 191 - -
Bda02g00187 196 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Bda02g00187 196 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Bda02g00187 196 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bda02g00187 196 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 191 - -
Bda02g00187 196 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00187 Bda-Chr2:36024788 Bda11g00143 Bda-Chr11:1883290 9.58E-83 dispersed
Bda04g00139 Bda-Chr4:3414228 Bda02g00187 Bda-Chr2:36024788 4.01E-142 transposed
Bda12g00577 Bda-Chr12:12270133 Bda02g00187 Bda-Chr2:36024788 5.39E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15532 PF00847 AP2 3.50E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00187 - - qsu:112002896 236.113