Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00260 ATGGATAATACTGGAGGTGATCTCAATAACTACTGGGATGGCGATATCTTTCTAAGAGCCGAAGAAATTGACAGCTTAGGATTGGACGAGACTTTATCGAGTTATTATGATTCTAGCTCACCGGATGGTTCTACGTCGAAAAACATAGTTATGGAGAGGAATAGAAGGAAGAAGCTAAACGAAAGACTGTTCGCACTCAGAGCTGTAGTTCCTAACATTACAAAGATGGATAAGGCGTCGATAATCAAAGACGCCATAGACTACATCCAAGAGCTTCAAGAGCAAGAAAGAATACTCCAAGCGGAAATAGAAGAGCTAGAGAGCGGAACGGTGTTGAAAGACGTTGGAGGCTTCGACTTCGAGCGAGATCTACCGATTCTACTCCGATCAAAGAAAAGGAAGACGGAACAGCTCTCTGATCCTGGAGGATCTGTAACTTCTCCCATTGAAGTCCTCAATCTGACTGTTACATTCATGGGAGAGAAAACAATGGCGGTGAGCTTGACGTGCACGAAGAGAAGGGAAACAATGGTGAAACTGTGTGAGGTGTTTGAAATGATAAAGCTGAAACTCATCACTGCTAGCATCATTGAGGTGTCTGGAAGACTTATCAAGACCCTTTTCATTGAGGTTAGTCAGCCATTATTTGTTAATTATTATTTTAATTTTCCCTTAATTACCCCTAATCCCTCTTTGAATTCCAATTCCAATTCCAATGCTGCAATGGTTCATTCTTGCACAGATTTGTTAGAAGTCAAAAATCAAATGATATGA 774 40.96 MDNTGGDLNNYWDGDIFLRAEEIDSLGLDETLSSYYDSSSPDGSTSKNIVMERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIDYIQELQEQERILQAEIEELESGTVLKDVGGFDFERDLPILLRSKKRKTEQLSDPGGSVTSPIEVLNLTVTFMGEKTMAVSLTCTKRRETMVKLCEVFEMIKLKLITASIIEVSGRLIKTLFIEVSQPLFVNYYFNFPLITPNPSLNSNSNSNAAMVHSCTDLLEVKNQMI 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40638117 40639183 + Bda014912.1 Bda02g00260 2555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00260 257 PANTHER TRANSCRIPTION FACTOR BHLH35 8 213 - -
Bda02g00260 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Bda02g00260 257 Coils Coil 82 109 - -
Bda02g00260 257 Pfam Helix-loop-helix DNA-binding domain 48 93 IPR011598 GO:0046983
Bda02g00260 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 108 IPR036638 GO:0046983
Bda02g00260 257 SMART finulus 49 98 IPR011598 GO:0046983
Bda02g00260 257 Gene3D - 38 109 IPR036638 GO:0046983
Bda02g00260 257 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00260 Bda-Chr2:40638117 Bda02g00262 Bda-Chr2:40879425 5.27E-132 dispersed
Bda02g00260 Bda-Chr2:40638117 Bda02g00261 Bda-Chr2:40695923 1.73E-127 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15535 PF00010 HLH 9.60E-13 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00260 - - jre:109003087 256.144